Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06440 369 / 5e-121 unknown protein AT3G11720 324 / 4e-103 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021251 [exp] 1144 / 0 AT5G06440 372 / 3e-122 unknown protein Lus10029362 [exp] 527 / 0 AT5G06440 348 / 3e-117 unknown protein Lus10029361 [exp] 375 / 2e-122 AT5G06440 331 / 8e-108 unknown protein Lus10016186 [exp] 355 / 7e-115 AT5G06440 306 / 1e-98 unknown protein Lus10016185 [exp] 192 / 1e-56 AT3G11720 136 / 1e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201000 [exp] 443 / 5e-147 AT5G06440 390 / 6e-129 unknown protein Potri.016G067000 [exp] 436 / 6e-143 AT5G06440 370 / 6e-120 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013601 pacid=23168762 polypeptide=Lus10013601 locus=Lus10013601.g ID=Lus10013601.BGIv1.0 annot-version=v1.0 ATGGGGGATAAGAAAGATGAAATTTTCCAGTATAGAGCAAGGTTGGACAAGTCATTGGCATCTCCTCAACTGACAAATCATGCAACCCTTAAAGGCCTTG TCAGGAATCAAATGCTACAGTCCAGACTTGATGACAATGAAGAATGTAGCGAGGATCTGCTGGACAAACGAACCGGGGATGTTTCCAACTTTCTTGACAT GTTGAGGAGTGCTTCTGATAATGGGAGTGAACCATCCAAAACCAATGAGCCACCCTCTGGTGATTGGAAAGTTAAAGAAAGTAACCATGAGTACCGTGTT ATGTACCGTCCAGGACTTCAGGGAACCCCGTTTCATACTCTACTGGTGGAAGGCTACGTAGATGGGCCAGTCGATGCATGTTTATGCATTGGTTGGGAGT CAACACTGTACAGGAAATGGTGGCCACAAATCATTATGCCAGCTTTCAGAATTATGGTGTGCAAATGCTTGAAAAAGATCCGTATAGGCGAACAGATATC TCTAGTCAGGGTGAAGGTTAGTTGGCCATTGCAAGCTAGGGAGGTTGTAATTCACTATGTTTTATTCGAGTACATCGAGGAGGGGATAATTATTGTTCTT TTGAATACGATCCCTGGTTTGGATACCATTGATATAAATACCCACGGGTATACCAAGGACGGAATACCTGAAGCTGAGGACGTAGTAAGAGCTGATTTGG TGGGTGGTTTTGCTTTGCAAAAGGTTTCCTCTGCCAGAAGTTACTTTCGGACTATTGCTACCGTGGACCTTAAGCTGGATTTTGTTCCTCCAGCCCTCAT AAATTTTATCTCAAGACAGCTAATTGGAAGTGGTTTCAAACTTTATCAGAAGGTAGTGACTGGCTTAGGTAAGAAAGATGATGAAGAATATGTCCAGGCA TTGGCAGATCCTTTCTACGTTCAAAAACGAGAGGCTATCTATGCTACCGATGGTCAACATAAGATCAAGGAAGGGAAAGGCTCACCAGACACCATTAGCC TTCGACAACATGACCGTTCCATCACTCTCGGGGAGCGAAGCTCAGAGGAGAAGAAAGGAAATACTGATGAAGATGATGTAGATGCAGAAAGATTGATAGC TGAACAAAAGAAGGAAGTAAATGAGATTGAAGAATGTGAGAATGAAGGAAATGAAGTCCTGGTGGATGAAGTTGAAATCAGAAGAGCTGAACATAAAGAT GAAAAGAATGGTATTACTGGTGAAATTCTGCTAGATGATGGCTCACTGGTTGCAGAGATGTATAGTAGTTCTGATGAGATTTCGGAGGACGGTGATGAAG ATATAGGTCAACTATCTGCCTCAACCATCAGAATTGCAGAAATGGGTTCTGTGAAGTCTGAAAAGAATGTTGCCTTAAATCCTGAGGTGAAACGTGCGTT AGAAACTTTAGAAAAGGCCATCTTCATGGTCCGAAATTCGAAAACCAATGCTCTAGAGAGGCCACTCCCTACTATAGTTGATGAAGAGAGCTCCAATGGT GCAGAAAAGGATTCAAGTCCTACTAAAGACAACAATGATAGGACGCGTCAGAATGCAAATGATGTTCCTCCTGAAGCTCCAGCCGGAAATGTAAGACCCG TGGGGAGGAATTCGCACGATTCCAGTTTCACCACCAGGCATTCAGGATCTAGCTCTATAATGAGGGAGCCTAACCATAAAAAAGTAGCACCAGCATCACC AGAGCGACATGTCTTGAATCGAGCACAGGTTTCGAGCGAGAACATGAATAGTATGACTGAAACTACACTGTTTGACCAAATGAGAGTTGACGATGCTGTC GACAAACTAGCTTCGAGGACAAATGGCATCCATGGTAATGGTTTCGATAACGTAGAGGGAATGAAGAAAAAGAAGAAGAAGCAGAGATGGTTTCCTATAG CTGGAAGCCATAGCAATGGTGTGCAGCAGAGAGGGGAGAAGCAGCAGCATCCATTGTGTTGCTTTGTTCCTGGGTCAGGTTCAGTTAAGTGA
AA sequence Show only first row Show all	>Lus10013601 pacid=23168762 polypeptide=Lus10013601 locus=Lus10013601.g ID=Lus10013601.BGIv1.0 annot-version=v1.0 MGDKKDEIFQYRARLDKSLASPQLTNHATLKGLVRNQMLQSRLDDNEECSEDLLDKRTGDVSNFLDMLRSASDNGSEPSKTNEPPSGDWKVKESNHEYRV MYRPGLQGTPFHTLLVEGYVDGPVDACLCIGWESTLYRKWWPQIIMPAFRIMVCKCLKKIRIGEQISLVRVKVSWPLQAREVVIHYVLFEYIEEGIIIVL LNTIPGLDTIDINTHGYTKDGIPEAEDVVRADLVGGFALQKVSSARSYFRTIATVDLKLDFVPPALINFISRQLIGSGFKLYQKVVTGLGKKDDEEYVQA LADPFYVQKREAIYATDGQHKIKEGKGSPDTISLRQHDRSITLGERSSEEKKGNTDEDDVDAERLIAEQKKEVNEIEECENEGNEVLVDEVEIRRAEHKD EKNGITGEILLDDGSLVAEMYSSSDEISEDGDEDIGQLSASTIRIAEMGSVKSEKNVALNPEVKRALETLEKAIFMVRNSKTNALERPLPTIVDEESSNG AEKDSSPTKDNNDRTRQNANDVPPEAPAGNVRPVGRNSHDSSFTTRHSGSSSIMREPNHKKVAPASPERHVLNRAQVSSENMNSMTETTLFDQMRVDDAV DKLASRTNGIHGNGFDNVEGMKKKKKKQRWFPIAGSHSNGVQQRGEKQQHPLCCFVPGSGSVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06440			unknown protein		Lus10013601 [exp]	0	1
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	1.7	0.7352
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10003654 [exp]	6.3	0.7183
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10020721 [exp]	9.8	0.6757
					Lus10000810 [exp]	9.9	0.6650
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	10.4	0.7178
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Lus10037873 [exp]	16.5	0.7169
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10034227 [exp]	17.1	0.7252
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10028252 [exp]	18.2	0.6576
AT2G03810			18S pre-ribosomal assembly pro...		Lus10036829 [exp]	19.2	0.7150
AT1G28100			unknown protein		Lus10001800 [exp]	23.1	0.6950

Compare expression of checked genes

Lus10013601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.