Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06400 812 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 199 / 2e-52 PGR3 proton gradient regulation 3 (.1) AT1G06710 168 / 1e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 156 / 7e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 155 / 2e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 149 / 7e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 145 / 3e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64580 140 / 9e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 140 / 1e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 140 / 2e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021250 [exp] 1478 / 0 AT5G06400 988 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 188 / 9e-49 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10013841 [exp] 176 / 3e-45 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 172 / 5e-44 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 172 / 8e-44 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 162 / 1e-40 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039056 [exp] 157 / 3e-39 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 156 / 4e-39 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 155 / 8e-39 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G200800 [exp] 923 / 0 AT5G06400 1132 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G124900 [exp] 187 / 1e-48 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 169 / 6e-43 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 168 / 2e-42 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.007G123600 [exp] 167 / 3e-42 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G014100 [exp] 163 / 4e-41 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 159 / 3e-40 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 152 / 1e-37 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G249800 [exp] 151 / 2e-37 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G025600 [exp] 150 / 3e-37 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013602 pacid=23168739 polypeptide=Lus10013602 locus=Lus10013602.g ID=Lus10013602.BGIv1.0 annot-version=v1.0 ATGAAGCATCTGATTAGGACGGGATTGCTAATCAAGCCGCCATCTTTAATCACTACTCCCAATTGTTCCTCTCGTGCATTATCACGCCTTTCGTCACTCT TTAGATCGCCTAGAAAATCCGATTCCCCATGCAAAGGAACTACATCGCAACATGCCGCAGAATCTAATTCTGGTAATATTAATTCTCTCTTCCTGCAGAT CGCTGAAATTTTGGGAGCTGATGAAGTCATCCCAGATAGGAACCCAGTTGGGATTTGTGTTTCCGAGAAGACCAAGGTTGCGAAAAGCGAATTCAGCAGG GGGATGACTGGCTGCCCGCCAGGTGTTTGTGAAAATGCTCAAGAGGTAAAAGGGGAGATTTTGGTTTCGGAAGATTTATCTTCAGCTGTACGAGATATTA GTCCTTTGGTTCGCCAGGTTGTTGATGCTGTTAGAGCTGGGGATGATACAGCCTCGATGGAGCAGAGGTTAGAGCGAATGAAATGTCAGTTTGATGCAGA TGTCGTGGACGAAGTACTTAAGAGGTGCTTTCACGTGCCGCATCAAGCTTTTAGGTTCTTCAATTGGGTTAGGAACGAATACCGGTTTCGTCACACGACT GATACTTACCACGCCATGATGTGCATTGCTGGTGAAGCTCAAGAATTGGGATTGCTTGATCGTTTGGCTGATGATATGAATGATAAAGGCGTGGAAAAAG ACTTCAAGACGTGGACCATCCTGATCTCGGAGTATGGGAAGACGAAGCAGCTGGGTAAACTGCTAATATGCTTTGAGCAGATGAAGAAATCTGGTCTTGA ACCTGACACACAAACATACCAAATGGTGATACAGAGTGCGTGCAACGCTGGAAAGGGTGAAATAGGTTTGGAACTTTACAAGGAGATGGTGCTGGGTAAC ATGGAAGTGGATATAAGTTTATATGAAGTCCTATTGGATTCCTTAGCAAAGTTGGGAGATTCGGAAGCTGTTAACTTGATTGCTGATGATATGACGCGGG TATCCCAGATCCCAGAAAGGGATGCTTACTTATATGTGCTGAAGAGTTATTGTGAAGTCGGGATAATTATGGAAGCTTTAGAGTTGATTCGTGATCTCAA AGATAAAGGGATACCACTTGACTTGGAATATTTTGAGACCTTGGTCAAAGGTTTATGTAGAGCTGATAGAATTGGTGATGCTTTGGAGATCATTGAAATT ATGAAGAAAAGAAACTTGGATAGCTGGAAAGTTTATGATTTTGTAATCAGCGCTCACTTAAGAAGCAAAGAACTGTCCAAGGCATTTGATCTATTTGAAA GCATGAAGCAATCTGGATTTAGTCCTACAACTTCCACCTACACGGAGCTAATGCAACAGCTGTTCAACTCTGATGAATATGAAAAAGGATGCAAGTTATA TGCTGAGATGCTGGAAAGAGGGCTTGATGTAGACAATGAAGCTATCATGGCTGTGGTTGCAGGTCATGTTCGCCATGACCATTTATCAGAAGCATGGGAA GTTTTCAGGAGCATGGAAACCAAAGGTATTAAACCCACCAGGAAATCTTATTCCGTGCTCATTAAGGAGCTTTGCAGAGTTTCAAGAACAGAAGAAGTAT TGAAAGTTATGCATGAATTGCAAGAGTCGGATATGTCTATGAATCATGAAATATTTGACTGGGTTATATCTTACATGGAGAGGAACGGGGAGGTGGAAAA TGTTGAGAAACGAAGCCGTAAACCACGACTAAAATCAAGTAAGGATTTGGTGCAGCCGGTTCCAAGGGCATATTCCGAGCAGGACTTGCAGGAAATTGTT GGAATCATATCATCGTTTGGCAATTGGTCGCTCATCGAGGAAGCATTGGAGAAATGCGAGATTAAGTTCACACCAGAGCTAGTGCTGGAAGTTCTGCGCA AATGCAGTATCCATGGGAACAAAGCATTGAACTTCTTCTCATGGGTAGGAAAGCAAACCGGATATTCCCACACTTCGGAAACATACAACATGGCCATGAA AATTTCAGGGCGAGGGAAAGATTTTAAGCACATGAGAAGTCTGTTTCACGAGATGAGGAGAAAGCGTTACTCAGTGTCACCAGATACATGGACAATCATG ATAATGCAGTACGGCCGAACAGGTCTTACAGAGATCGCACTAGAGATCTTCAAAGATATGAAAGCAAGTGGCAGCGACCCTACTGAAAGCACCTACAAAC ACCTGATCATCTGCCTCTCTGAAGGAAAAGGAAGGAAAGTTGATGAAGCCATGAAAATATTCCAGGAGATGATCCGAGCAGGGTTCATCCCAGACCGGGA AATGGCTGAAACTTACATCCGTTGCTTGTGTGAATCCGATAAGCTACCAGAAGCCAGAAGATGCATCAAATCTATATGTAAAGAGAAGCAACCCGAAAAG GCCCTGGAAACCTTGGAGAAAATGCAGGAAGAAGGCTGCAAGCCTTCCATCGTCACACATTCGGCCATGATTCGCGGATACATGAACTTGGGAAAAACAT CTGAAGCATGGAGCCTCTTCCGTCGTCTGAAACAGGAAGGTCCTGCCCCTGATTTCCAGACGTATTCCATGTTCATTAGCTGCCTGTGCAAGGCTGAGGA GTCTGAACAGGCTCTGCAGCTTGTGTCTGAAATGATGGAGAGTAAGATCGTTCCAAGTACTTATAACTTCAGAGAAGTCTTCTTTGGGCTGAACAGAGAA GGGAAGCAAGATTTAGCTAGGGGCGTACTGCAGCAGAAGTGGGATTTGATCAAGAAACGCAAATTCCTAACTTAG
AA sequence Show only first row Show all	>Lus10013602 pacid=23168739 polypeptide=Lus10013602 locus=Lus10013602.g ID=Lus10013602.BGIv1.0 annot-version=v1.0 MKHLIRTGLLIKPPSLITTPNCSSRALSRLSSLFRSPRKSDSPCKGTTSQHAAESNSGNINSLFLQIAEILGADEVIPDRNPVGICVSEKTKVAKSEFSR GMTGCPPGVCENAQEVKGEILVSEDLSSAVRDISPLVRQVVDAVRAGDDTASMEQRLERMKCQFDADVVDEVLKRCFHVPHQAFRFFNWVRNEYRFRHTT DTYHAMMCIAGEAQELGLLDRLADDMNDKGVEKDFKTWTILISEYGKTKQLGKLLICFEQMKKSGLEPDTQTYQMVIQSACNAGKGEIGLELYKEMVLGN MEVDISLYEVLLDSLAKLGDSEAVNLIADDMTRVSQIPERDAYLYVLKSYCEVGIIMEALELIRDLKDKGIPLDLEYFETLVKGLCRADRIGDALEIIEI MKKRNLDSWKVYDFVISAHLRSKELSKAFDLFESMKQSGFSPTTSTYTELMQQLFNSDEYEKGCKLYAEMLERGLDVDNEAIMAVVAGHVRHDHLSEAWE VFRSMETKGIKPTRKSYSVLIKELCRVSRTEEVLKVMHELQESDMSMNHEIFDWVISYMERNGEVENVEKRSRKPRLKSSKDLVQPVPRAYSEQDLQEIV GIISSFGNWSLIEEALEKCEIKFTPELVLEVLRKCSIHGNKALNFFSWVGKQTGYSHTSETYNMAMKISGRGKDFKHMRSLFHEMRRKRYSVSPDTWTIM IMQYGRTGLTEIALEIFKDMKASGSDPTESTYKHLIICLSEGKGRKVDEAMKIFQEMIRAGFIPDREMAETYIRCLCESDKLPEARRCIKSICKEKQPEK ALETLEKMQEEGCKPSIVTHSAMIRGYMNLGKTSEAWSLFRRLKQEGPAPDFQTYSMFISCLCKAEESEQALQLVSEMMESKIVPSTYNFREVFFGLNRE GKQDLARGVLQQKWDLIKKRKFLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10013602 [exp]	0	1
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10040493 [exp]	14.7	0.8577
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	15.0	0.8323
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	17.0	0.8495
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	17.4	0.8559
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	27.1	0.8419
AT1G30960			GTP-binding family protein (.1...		Lus10032427 [exp]	28.4	0.8381
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	32.8	0.8227
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	37.5	0.8399
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10024222 [exp]	37.7	0.8040
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	37.7	0.8391

Compare expression of checked genes

Lus10013602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.