Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10660 792 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G04870 791 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT2G38910 764 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT4G35310 704 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT2G17290 700 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT1G35670 692 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT4G38230 689 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT4G09570 686 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT5G23580 648 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT5G12180 630 / 0 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021248 [exp] 1237 / 0 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10028862 [exp] 808 / 0 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10008958 [exp] 805 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10015992 [exp] 773 / 0 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10012285 [exp] 769 / 0 AT2G38910 884 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10029346 [exp] 750 / 0 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10016200 [exp] 746 / 0 AT2G38910 868 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10029358 [exp] 741 / 0 AT5G04870 672 / 0.0 calcium dependent protein kinase 1 (.1) Lus10022986 [exp] 718 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066700 [exp] 860 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.006G200600 [exp] 856 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 825 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 817 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G199400 [exp] 764 / 0 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.016G065700 [exp] 757 / 0 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.004G207300 [exp] 713 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.019G083200 [exp] 711 / 0 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.009G168600 [exp] 709 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.013G112500 [exp] 702 / 0 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10013603 pacid=23168726 polypeptide=Lus10013603 locus=Lus10013603.g ID=Lus10013603.BGIv1.0 annot-version=v1.0 ATGGGGAACAACTGTGTTCAACCAAAGGGTGCATATGCAGCTGGAGGAATGTGCAATCCAGAATGGTGGTCAAAGTCAGCAACACAGCACTTTGATAAGA AGCTATCAGCTAGCAGCAAGAGAATGGAAGAAGCTGCTGCTGTTGGTAATCATAAAATTGCAGGCTCGGGAGAGTCTGCTCCTGATAAGCCTCCTGAGGA AATGAAGATGGAGAAGAAACCATCTGAAAAGGTGTTTCCTTTTGTGCCCCTGGAGATTGCTAAGCCTCCTGAAGAGCCAAAACAAGCTGCCAAAGTCAAA GAGGCTCCAATGGAATTGCCACCAAAGAGAGTAGAGGTCAAGATGGATCATCATATTTCTGCTAAACCAGCTCAGCCACAAGCTCAACTCGAGCCTGCTC GAATTGAGGTACCGGTCAAGCCGCAGCCCCCTGAGCCACAGTCAAATAGGCCTCCAAAGACAGCACCCCATGTGAAGAGGATGTCAAGTGCAGGACTCCA GACAGATTCAGTGTTGAAAACCAAGACAGGACATTTGAAAGAGCACTACAACTTGGGGAAGAAGCTTGGACATGGCCAATTTGGGACAACTTTCCTGTGT ATAGAGAAAGCAACAGGAAAGCACTATGCTTGTAAATCCATTGCCAAAAGGAAGCTGCTGACTATGGATGATGTGGAGGATGTGAGGAGGGAGATTGAGA TCATGCATCACTTGTCTGGTCACCCTAACATCATACGAATCAAGTCGGCTTTCGAGGATTCTGTTGCTGTTCATGTTGTGATGGAGCTTTGCTCTGGAGG TGAGCTGTTTGATAGGATCATTAGGAGAGGTCATTACAGTGAGAGGAAAGCTGCTCAGATCACTAGGACTATATTTGGGGTCATTGCAAACTGCCATTCT CTAGGGGTGATGCATAGAGATTTGAAGCCTGAGAATTTCCTCTTTGTTGATGAGAATGAAGAGTCTCATCTCAAGGCTATTGATTTTGGACTATCAGTAT TCTTCAAGCCTGGCCGGAATTTCAATGATGTGGTTGGAAGCCCTTACTATGTTGCACCAGAAGTTCTGAAGAAGAGGTATGGTCCTGAAGCTGATGTGTG GAGTGCTGGAGTCATGGTTTACATTCTCTTAAGTGGAGTTCCTCCTTTCTGGGCTGAAACTGAAGATGAGATTTTCCAAGAAGTTTTACAAGGGGATCTG GACTTCAACTCAGATCCTTGGCCTCAAATCTCCGAGAGTGCTAAGGATTTGGTAAGGAGAATGCTTGTAAGAGACCCGAAGAAGAGGATAACCACCCATG CAGTTCTCTGCCACCCTTGGGTCAGAGAAGATGGAGTGGCACCTGACAAGCCTCTTGATTCAGCTGTCCTGTCTCGTTTGAAACATTTCTCTGCCATGAA CAGGCTGAAGAAAATGGCACTGAGAGTAATTGCAGAGAAACTGTCTGAAGAAGAGATTGCAGGGCTGAGGGAAATGTTCAAGATGATAGACACGGATAAC AGTGGCTCCATCACCTTTGAAGAACTCAAAGTTGGACTCAAAAAGTTTGGTGCAAACCTTGATGAGTCTGAAATCTATGGCCTTATGCAAGCGGCTGATA TCGACAACAATGGGACAATTGATTACGCTGAGTTCATAGCAGCAACATTGCACCTAAACAAAGTGGAGAAGGAAGATCATCTCTTTGCAGCCTTTTCTTA CTTTGACAAGGATGGAAGTGGCTACATCACAATGGATGAGCTTCAACAAGCCTGCAACGACTTCGGGATGGAGGCTGTTCACTTGGAAGATATGATCCGA GAAGTAGATCAGGATAATGATGGTCGCATAGATTACAGTGAGTTTGTGGCAATGATGCAGATGGGCAACACTGAAATTGGTAAGAATGGTGTGAAGGGTA GAAATGTGGGAATTTCATTTAGGGAGGCATTGCCAGTTTGCTGA
AA sequence Show only first row Show all	>Lus10013603 pacid=23168726 polypeptide=Lus10013603 locus=Lus10013603.g ID=Lus10013603.BGIv1.0 annot-version=v1.0 MGNNCVQPKGAYAAGGMCNPEWWSKSATQHFDKKLSASSKRMEEAAAVGNHKIAGSGESAPDKPPEEMKMEKKPSEKVFPFVPLEIAKPPEEPKQAAKVK EAPMELPPKRVEVKMDHHISAKPAQPQAQLEPARIEVPVKPQPPEPQSNRPPKTAPHVKRMSSAGLQTDSVLKTKTGHLKEHYNLGKKLGHGQFGTTFLC IEKATGKHYACKSIAKRKLLTMDDVEDVRREIEIMHHLSGHPNIIRIKSAFEDSVAVHVVMELCSGGELFDRIIRRGHYSERKAAQITRTIFGVIANCHS LGVMHRDLKPENFLFVDENEESHLKAIDFGLSVFFKPGRNFNDVVGSPYYVAPEVLKKRYGPEADVWSAGVMVYILLSGVPPFWAETEDEIFQEVLQGDL DFNSDPWPQISESAKDLVRRMLVRDPKKRITTHAVLCHPWVREDGVAPDKPLDSAVLSRLKHFSAMNRLKKMALRVIAEKLSEEEIAGLREMFKMIDTDN SGSITFEELKVGLKKFGANLDESEIYGLMQAADIDNNGTIDYAEFIAATLHLNKVEKEDHLFAAFSYFDKDGSGYITMDELQQACNDFGMEAVHLEDMIR EVDQDNDGRIDYSEFVAMMQMGNTEIGKNGVKGRNVGISFREALPVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10013603 [exp]	0	1
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015400 [exp]	3.9	0.8300
AT4G00440			Protein of unknown function (D...		Lus10014776 [exp]	3.9	0.8200
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10041302 [exp]	14.4	0.7556
AT1G70140		ATFH8	formin 8 (.1)		Lus10029212 [exp]	15.1	0.7355
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	15.2	0.8246
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	17.2	0.7773
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	28.1	0.7901
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10017963 [exp]	31.7	0.7927
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002378 [exp]	36.1	0.7744
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10021245 [exp]	50.8	0.7672

Compare expression of checked genes

Lus10013603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.