Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06390 543 / 0 FLA17 FASCICLIN-like arabinogalactan protein 17 precursor (.1) AT3G52370 534 / 0 FLA15 FASCICLIN-like arabinogalactan protein 15 precursor (.1) AT2G35860 531 / 0 FLA16 FASCICLIN-like arabinogalactan protein 16 precursor (.1) AT3G11700 518 / 0 FLA18 FASCICLIN-like arabinogalactan protein 18 precursor (.1) AT5G05650 117 / 1e-31 unknown protein AT5G60490 42 / 0.0005 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029353 [exp] 590 / 0 AT5G06390 600 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Lus10016194 [exp] 462 / 3e-162 AT3G11700 492 / 5e-174 FASCICLIN-like arabinogalactan protein 18 precursor (.1) Lus10021247 [exp] 334 / 1e-111 AT2G35860 301 / 8e-99 FASCICLIN-like arabinogalactan protein 16 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G200300 [exp] 544 / 0 AT5G06390 616 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.016G066500 [exp] 535 / 0 AT5G06390 620 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.008G012400 [exp] 499 / 2e-175 AT5G06390 577 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.010G244900 [exp] 492 / 7e-173 AT5G06390 580 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.019G008400 [exp] 344 / 6e-116 AT5G06390 414 / 5e-143 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.010G198250 [exp] 342 / 1e-115 AT5G06390 404 / 1e-139 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.012G006200 [exp] 337 / 2e-112 AT5G06390 400 / 4e-137 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.019G120800 [exp] 45 / 4e-05 AT5G60490 124 / 2e-34 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G121100 [exp] 43 / 0.0002 AT5G60490 168 / 2e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151366 [exp] 43 / 0.0003 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10013604 pacid=23168735 polypeptide=Lus10013604 locus=Lus10013604.g ID=Lus10013604.BGIv1.0 annot-version=v1.0 ATGGATCCCCCAATCTATGGTGTCTCTTTCCTCTTCTTCTTCTTCTTCCTCCTCCTCTCCACTTCCACCGCATTGCCTTCTAAATCCACCAATCAAATCA ACTCCAACTCCGTCCTCGTCGCCCTCCTCGACTCCCACTACACTGAGCTCTCCGAGCTCGTCGAAAAGGCCCTGCTCCTCCCGGAGCTCGAAGCCGCCGT TGGAACCCATAACCTAACCATCTTCGCTCCTCGCAACGAAGCTCTCCAGCGCCGTCTCGACCCGGAGTTCAAGCGCTTCCTCCTCGAGCCCCGCAATCTC AAGTCCCTCCAGACCCTCCTCCTCCACCACATTATTCCTTCCCGGGTCGGATCCCCTGACTGGCCTTCCTCCTCCGCCGTCTACCCGGCCAAGCACCTCT CCCTCTCCTCCCACCACCTCCACCTCTCCACCCACCCTTCCTCTCGTAAAAAACTCGTCGGGTCATCCGAGATCGTCAAACCCGACGACCTCACCAGACC CGACGGCGTCATCCACGGCATCAACCAGCTCCTCGTCCCTCAATCCGTCCAGGAGGATTTCAACCGCAGGAGAAGCCTCAGATCCATCTCTGCCGTCCTC CCCGAGGGAGCTCCCGAAGTAGATCCGAGAACAAACCGGTTGAAGAAACCCGCACCGTCAGTACCCGCCGGAGCTCCCCCTGTTCTTCCGATTTACGACG CCTTAGCTCCCGGTCCTTCCCTAGCTCCGGCGCCGGCTCCCGGCCCTGGCGGCCCTCGCCATCACTTCGATGGGCACACCCAGGTGAAGGATTTCATCCA CACTCTGTTGCATTACGGTGGCTATAACGAGATGGCGGATATCTTGGTGAATTTGACCTCGCTGGCCACTGAAATGGGGAGACTAGTCTCGGAAGGGTAC GTCCTCACCGTTCTGGCTCCCAACGATGAAGCGATGGCGAAGCTGACGACGGATCAGCTAAGCGAACCGGGAGCTCCAGAGCAAATTATATACTACCACA TCATCCCGGAGTACCAGACAGAAGAAAGTATGTACAATGCAGTGAGAAGATTCGGGAAAGTTAAGTATGATACTCTCAGGTTGCCACACAAGGTCACTGC TCAGGAGGCAGACGGGTCGGTCAAATTCGGAGCGGGTGACGTGTCGGCTTATCTTTTCGACCCGGATATCTACAGCGACGGAAGGATATCAGTACAAGGA ATTGACGGGATACTGTTCCCGGAGACAGAGTCAACGGAGGAGCCGTTGAGGAAACCAGCTAGTCCCGTGAAAGTCGTCTCCAAGCCCAGGAGAGGTAAAA TTAAACTGTTCGATTACTAA
AA sequence Show only first row Show all	>Lus10013604 pacid=23168735 polypeptide=Lus10013604 locus=Lus10013604.g ID=Lus10013604.BGIv1.0 annot-version=v1.0 MDPPIYGVSFLFFFFFLLLSTSTALPSKSTNQINSNSVLVALLDSHYTELSELVEKALLLPELEAAVGTHNLTIFAPRNEALQRRLDPEFKRFLLEPRNL KSLQTLLLHHIIPSRVGSPDWPSSSAVYPAKHLSLSSHHLHLSTHPSSRKKLVGSSEIVKPDDLTRPDGVIHGINQLLVPQSVQEDFNRRRSLRSISAVL PEGAPEVDPRTNRLKKPAPSVPAGAPPVLPIYDALAPGPSLAPAPAPGPGGPRHHFDGHTQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGY VLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVKYDTLRLPHKVTAQEADGSVKFGAGDVSAYLFDPDIYSDGRISVQG IDGILFPETESTEEPLRKPASPVKVVSKPRRGKIKLFDY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10013604 [exp]	0	1
AT2G35860		FLA16	FASCICLIN-like arabinogalactan...		Lus10021247 [exp]	1.0	0.9764
AT5G67540			Arabinanase/levansucrase/inver...		Lus10019280 [exp]	5.2	0.9340
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10026428 [exp]	5.6	0.9153
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	6.0	0.9409
AT3G15480			Protein of unknown function (D...		Lus10032662 [exp]	6.5	0.9570
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10018801 [exp]	7.9	0.9534
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	8.5	0.9468
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10003544 [exp]	8.9	0.9328
AT1G12500			Nucleotide-sugar transporter f...		Lus10006684 [exp]	10.2	0.9068
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10042925 [exp]	12.6	0.9273

Compare expression of checked genes

Lus10013604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.