Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22000 323 / 5e-109 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 110 / 4e-27 RHF1A RING-H2 group F1A (.1) AT4G00335 62 / 4e-11 RHB1A RING-H2 finger B1A (.1.2.3) AT5G38895 62 / 6e-11 RING/U-box superfamily protein (.1.2.3) AT3G02290 62 / 7e-11 RING/U-box superfamily protein (.1.2) AT5G15790 61 / 2e-10 RING/U-box superfamily protein (.1.2) AT4G23450 56 / 3e-09 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G41350 56 / 8e-09 RING/U-box superfamily protein (.1) AT2G20030 55 / 3e-08 RING/U-box superfamily protein (.1) AT1G14200 52 / 8e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021245 [exp] 594 / 0 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 335 / 2e-114 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 320 / 1e-108 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10013374 [exp] 306 / 2e-101 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 301 / 7e-100 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3) Lus10010513 [exp] 173 / 2e-50 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 162 / 5e-46 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10017788 [exp] 61 / 9e-11 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10024635 [exp] 60 / 2e-10 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066400 [exp] 394 / 9e-137 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3) Potri.006G200200 [exp] 381 / 2e-131 AT5G22000 385 / 9e-133 RING-H2 group F2A (.1.2.3) Potri.001G213800 [exp] 350 / 3e-119 AT5G22000 385 / 1e-132 RING-H2 group F2A (.1.2.3) Potri.008G149300 [exp] 174 / 1e-50 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3) Potri.010G092300 [exp] 171 / 2e-49 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.014G087000 [exp] 64 / 1e-11 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.017G100100 [exp] 62 / 6e-11 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2) Potri.003G161600 [exp] 62 / 6e-11 AT5G15790 167 / 2e-51 RING/U-box superfamily protein (.1.2) Potri.001G068700 [exp] 61 / 9e-11 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.010G140300 [exp] 61 / 1e-10 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10013606 pacid=23168704 polypeptide=Lus10013606 locus=Lus10013606.g ID=Lus10013606.BGIv1.0 annot-version=v1.0 ATGGAGGGTCCGGAGGTGGATGAGGGGAAGAAAGCTGCAGCGGCTCAGATGATGACATCAGCTGCAGCTTTTGTGGAAGGGGGAATCCAAGATGGCTGCG AGGATGCTTGCAGCATTTGCCTTGATGACTTCACTTCAACGGATCCTTCCACTCTGACAAACTGCAGGCATGAGTATCACCTCCAATGCATCCTTGAATG GTGCCAGAGAAGCTCAGATTGTCCCATGTGTTTGCAGCCAGTTAGTTTGAAGGACCCCTTGAGCCAAGAACTATTTGCAGCAGTAGAACGAGAGAGGAAA ATCAGGGTTGCTGCTGCTTCTCGAAATACAACCACCATATTTCGTCATCCGACCCTGGGAGACTTTGAGTTGCAACACTTGCCTGCTGGTGCTACCGATG CTGACCTGGAACAACGTATAATCCAGCACCTAGCTGCAGCTGCTGCTATGGGAAGAACTCACTATGGTCGGAGAGAAGCACACAGAGGTAGTTCTGCTGC TTCACAACGGCGTCCGCACTTCTTGGTATTCTCCCCTCATCCTAATGCACAATCTTCCGGACAAATCGATACCTCTATGTCACACGAAAGTGAGCCAGCT GTCATCAATGTAGCTATTCCAGCAGCCCCTCTTACGGCTGATCTAAGCTCATCTCCGCCAGTCTATGCTGCCAGGCCGTTAATTCGTGCAGGATCCTCTA GGGAATCTTCACACCCGAATCCAGATTCAGCGGGACCTTCCGACTTGCAGTCATTTTCGGAAACTTTGAAGTCTAGACTTAGTTCAGTATCAATGAGGTA CAGAGATTCGTTCTCGAGAAGCACGAGAGGGTGGAAGGAGAGGCTTTTCTCTCGAAGCAATTCATTAACAGATATTGGTACTGAAGTGAGGAGAGAAGTG AATGCTGGAATTGCAAGTGTTTCGCGAATGATGGATCGTCTTGAAACTAGAGATAGTAATGGACGGGATGATGGTCCTCGGTCTTATTCATCTTCCACTA GAAGCAATCGCAATGGTGGCAGCAACCAGAACGGAAGCAACCCTTCTCCTTCAGTTACTGCAACTTCTGCGGCCACTTAA
AA sequence Show only first row Show all	>Lus10013606 pacid=23168704 polypeptide=Lus10013606 locus=Lus10013606.g ID=Lus10013606.BGIv1.0 annot-version=v1.0 MEGPEVDEGKKAAAAQMMTSAAAFVEGGIQDGCEDACSICLDDFTSTDPSTLTNCRHEYHLQCILEWCQRSSDCPMCLQPVSLKDPLSQELFAAVERERK IRVAAASRNTTTIFRHPTLGDFELQHLPAGATDADLEQRIIQHLAAAAAMGRTHYGRREAHRGSSAASQRRPHFLVFSPHPNAQSSGQIDTSMSHESEPA VINVAIPAAPLTADLSSSPPVYAARPLIRAGSSRESSHPNPDSAGPSDLQSFSETLKSRLSSVSMRYRDSFSRSTRGWKERLFSRSNSLTDIGTEVRREV NAGIASVSRMMDRLETRDSNGRDDGPRSYSSSTRSNRNGGSNQNGSNPSPSVTATSAAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013606 [exp]	0	1
AT5G39785			Protein of unknown function (D...		Lus10015368 [exp]	2.0	0.8586
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	3.7	0.8608
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	4.6	0.8700
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10021152 [exp]	5.1	0.8392
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10022148 [exp]	5.7	0.8463
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012340 [exp]	6.5	0.8540
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10019944 [exp]	8.4	0.8566
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017604 [exp]	9.2	0.8149
AT1G05170			Galactosyltransferase family p...		Lus10020042 [exp]	11.5	0.8058
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	12.6	0.8266

Compare expression of checked genes

Lus10013606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.