Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20720 363 / 5e-128 CHCPN10, ATCPN21, CPN21, CPN20 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) AT1G14980 54 / 3e-09 CPN10 chaperonin 10 (.1) AT3G60210 54 / 5e-09 GroES-like family protein (.1) AT1G23100 48 / 2e-07 GroES-like family protein (.1) AT2G44650 48 / 6e-07 CHL-CPN10 chloroplast chaperonin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021244 [exp] 467 / 3e-169 AT5G20720 372 / 1e-131 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10016196 [exp] 317 / 1e-108 AT5G20720 315 / 7e-108 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10036055 [exp] 47 / 1e-06 AT1G23100 134 / 7e-42 GroES-like family protein (.1) Lus10019497 [exp] 47 / 2e-06 AT2G44650 171 / 5e-56 chloroplast chaperonin 10 (.1) Lus10026822 [exp] 42 / 0.0004 AT2G26810 267 / 5e-87 Putative methyltransferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G138600 [exp] 370 / 1e-130 AT5G20720 395 / 1e-140 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Potri.018G063200 [exp] 368 / 5e-130 AT5G20720 383 / 5e-136 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Potri.001G274300 [exp] 53 / 4e-09 AT1G14980 165 / 6e-55 chaperonin 10 (.1) Potri.009G068900 [exp] 51 / 2e-08 AT1G14980 161 / 3e-53 chaperonin 10 (.1) Potri.008G130500 [exp] 48 / 3e-07 AT1G23100 157 / 7e-52 GroES-like family protein (.1) Potri.010G111600 [exp] 47 / 5e-07 AT1G23100 155 / 1e-50 GroES-like family protein (.1) Potri.014G044300 [exp] 47 / 2e-06 AT3G60210 211 / 1e-71 GroES-like family protein (.1) Potri.002G135700 [exp] 44 / 1e-05 AT3G60210 150 / 4e-48 GroES-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF00166 [flax] [poplar] Cpn10 Chaperonin 10 Kd subunit
Representative CDS sequence Show only first row Show all	>Lus10013607 pacid=23168743 polypeptide=Lus10013607 locus=Lus10013607.g ID=Lus10013607.BGIv1.0 annot-version=v1.0 ATGGCGTCCACTCAGCTCACAGCATCTTCAATCTCGGTGTGTGCCAGAAACTTGGTCTCATTCGAAGGGCTTAAACCCTCCACTATCAACTTTGCACCAC TGAAATCTGGTAGCTCGTCCCGGCGCTCATTCCGGGGATTGGTCGTCCAAGCAGCCACCGTCGTTGCCCCAAAGTACACGTCGATTAAGCCCTTGGGCGA CAGAGTGCTGGTGAAGATCAAGAACGTGGAGGAGACATCAGCTGGTGGCATTCTTATCCCGACATCAGCGCAGTCGAAGCCTCAAGGAGGTGAGGTGGTT GCTGTTGGTGAAGGGAAGACAATTGGTAGCAAAACAATTGACATTAGCGTCAAGACTGGCGCCCAGGTTGTTTATTCCAAGTATGCTGGTACTGAAGTTG AATTCAACGGCGAAAACCACCTCTTGCTGAAGGAAGACGACATTGTTGGTATTCTCGAGACTGACCACATTAAGGACCTCAAGCCTCTCAATGATAGAGT GCTCATTAAGGTTTCTGAGGCTGAAGAGATGACTGCGGGAGGATTGTTGCTCACAGATGCTACAAAAGAGAACCCTTCAACTGGCACGGTGATTGCCGTT GGGCCTGGGAGTGTTGACAAAGAAGATGGTACAGTGAAGCCACTGACGGTATCGCCAGGGAACACAGTACTGTACTCAAAGTATGCAGGGAATGACTTCA AGGGCAGTGATGGTTCAAACTACATTACTATCAGGGCCTCGGACGTGATGGCTGTGTTAGATTGA
AA sequence Show only first row Show all	>Lus10013607 pacid=23168743 polypeptide=Lus10013607 locus=Lus10013607.g ID=Lus10013607.BGIv1.0 annot-version=v1.0 MASTQLTASSISVCARNLVSFEGLKPSTINFAPLKSGSSSRRSFRGLVVQAATVVAPKYTSIKPLGDRVLVKIKNVEETSAGGILIPTSAQSKPQGGEVV AVGEGKTIGSKTIDISVKTGAQVVYSKYAGTEVEFNGENHLLLKEDDIVGILETDHIKDLKPLNDRVLIKVSEAEEMTAGGLLLTDATKENPSTGTVIAV GPGSVDKEDGTVKPLTVSPGNTVLYSKYAGNDFKGSDGSNYITIRASDVMAVLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10013607 [exp]	0	1
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10021244 [exp]	1.0	0.8708
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10043345 [exp]	2.0	0.8373
AT1G71730			unknown protein		Lus10029741 [exp]	2.4	0.8115
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10024383 [exp]	7.9	0.7446
AT4G15770			RNA binding (.1)		Lus10000507 [exp]	9.9	0.7960
AT2G41475			Embryo-specific protein 3, (AT...		Lus10043273 [exp]	12.7	0.7548
AT1G09680			Pentatricopeptide repeat (PPR)...		Lus10014170 [exp]	13.7	0.7842
AT3G06200			P-loop containing nucleoside t...		Lus10041236 [exp]	14.7	0.7886
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10025888 [exp]	15.7	0.8057
AT5G35320			unknown protein		Lus10020176 [exp]	18.5	0.7991

Compare expression of checked genes

Lus10013607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.