Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11690 56 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021243 [exp] 300 / 1e-103 AT3G11690 112 / 6e-30 unknown protein Lus10016197 [exp] 178 / 4e-56 AT3G11690 107 / 3e-28 unknown protein Lus10029349 [exp] 175 / 1e-54 AT3G11690 105 / 7e-28 unknown protein Lus10008446 [exp] 47 / 2e-06 AT2G27180 91 / 3e-23 unknown protein Lus10013375 [exp] 46 / 5e-06 AT2G27180 96 / 3e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066300 [exp] 101 / 1e-26 AT3G11690 62 / 5e-12 unknown protein Potri.006G200100 [exp] 77 / 4e-17 AT3G11690 / unknown protein Potri.004G190500 [exp] 44 / 3e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013608 pacid=23168759 polypeptide=Lus10013608 locus=Lus10013608.g ID=Lus10013608.BGIv1.0 annot-version=v1.0 ATGATATTCAATATCGACAGTAACGGCGACGCCCACAGCGTCCTCAAATCAAAGGAGCCGTCTTTGGTACTAATCCGCCCTTCTTCCCCGGCGCTAGGCA GGCGGCGTCAGGACACTCTCCTCCCGCCGCGGCACCGGCGGAGCTACTCTGCCTCGGAGGCGTCCTGCTGCAGCAGCAGGTTCGGAGAGCTCGCCGGAGG CACGACGGCCGAGTGCGCGGCGATCGCCTGCTGCTGCCCCTGCGGCCTGGCCAACCTCCTCTTCCTCACGATCTACAAGGTCCCCGTTGGGCTCTGCCGG AAGGCGCTGCGGCGGAAGCGGAGGGAACATTTGATGAAGAAGGGCCTGTTGCTGCCGCAGTCACGGCGGTGCCAGTGCGGGTGCGATGATACCGAGCTCC AGATTCATCCGATTCACGGAGACGCCCACTCGTTCGATATGAAGATGATGATGGGGATGCACTTGGATTTCGACGATGAGGAAACGGAGGAGGAGGACAT CGCCGTTAGGGAGATCCGCGGCGTCGGAGGAGGTGGAGGAGAAGAGATGGTGAAGCTGGAGAAGGAGATGTGGGAAACATTATACGGGACTGGATTCTGG AGGAGTCCTTCGCAGAAGGAAGGTCCGGTAACCGGAGTGAAGAAGAGCGGCGGTGGCGTTCCTCCTCCGGCGAGCACTGAATCGAATCTCAGAGAAGCTT CTTCCAAGGCCAAAGAAACGTAA
AA sequence Show only first row Show all	>Lus10013608 pacid=23168759 polypeptide=Lus10013608 locus=Lus10013608.g ID=Lus10013608.BGIv1.0 annot-version=v1.0 MIFNIDSNGDAHSVLKSKEPSLVLIRPSSPALGRRRQDTLLPPRHRRSYSASEASCCSSRFGELAGGTTAECAAIACCCPCGLANLLFLTIYKVPVGLCR KALRRKRREHLMKKGLLLPQSRRCQCGCDDTELQIHPIHGDAHSFDMKMMMGMHLDFDDEETEEEDIAVREIRGVGGGGGEEMVKLEKEMWETLYGTGFW RSPSQKEGPVTGVKKSGGGVPPPASTESNLREASSKAKET

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11690			unknown protein		Lus10013608 [exp]	0	1
AT5G60460			Preprotein translocase Sec, Se...		Lus10036119 [exp]	1.4	0.8277
AT1G26920			unknown protein		Lus10030488 [exp]	3.2	0.8206
AT3G14460			LRR and NB-ARC domains-contain...		Lus10006793 [exp]	5.3	0.8209
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	6.2	0.8264
AT3G57990			unknown protein		Lus10012013 [exp]	7.4	0.7959
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10040225 [exp]	11.0	0.8050
AT1G53900			Eukaryotic translation initiat...		Lus10037451 [exp]	11.4	0.7979
AT1G70000	MYB		myb-like transcription factor ...		Lus10010733 [exp]	12.8	0.8220
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008499 [exp]	15.1	0.7717
AT2G35900			unknown protein		Lus10021249 [exp]	18.5	0.8025

Compare expression of checked genes

Lus10013608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.