Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021242 [exp] 89 / 2e-24 ND 38 / 1e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013609 pacid=23168708 polypeptide=Lus10013609 locus=Lus10013609.g ID=Lus10013609.BGIv1.0 annot-version=v1.0 ATGAGTTGTTTGTGGTGGATGAAGGGGGTAGGCTACGTGGCGGCGGTGGCGGTTTCCGGCGGAAGTGTTGCACTGATAGCTCGTCAAATCCACGACCGAC TCCTTGAAGATTTCATCTCTCAGCTCCATTTCCACCTCCTCCCTAGCAATTCTCCTCCTCCTGATGATAATAATAATTCGAAACCCAGGACGAAACGGGT GCGTTTTGCTGATGACGTGGTGGCAAGAGATGATCTTAAGCAGATCGCGGCCGGGAGACTAGTCCGGCCGACAGCGGAGCTCTGTACGGGAAATTAA
AA sequence Show only first row Show all	>Lus10013609 pacid=23168708 polypeptide=Lus10013609 locus=Lus10013609.g ID=Lus10013609.BGIv1.0 annot-version=v1.0 MSCLWWMKGVGYVAAVAVSGGSVALIARQIHDRLLEDFISQLHFHLLPSNSPPPDDNNNSKPRTKRVRFADDVVARDDLKQIAAGRLVRPTAELCTGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013609 [exp]	0	1
AT5G65060	MADS	FCL3, MAF3, AGL...	MADS AFFECTING FLOWERING 3, AG...		Lus10037038 [exp]	1.0	0.7976
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10011408 [exp]	15.2	0.7604
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041282 [exp]	17.7	0.6719
AT1G02850		BGLU11	beta glucosidase 11 (.1.2.3.4....		Lus10007872 [exp]	18.8	0.7016
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040787 [exp]	22.0	0.7169
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	27.1	0.7221
AT3G03341			unknown protein		Lus10009121 [exp]	29.3	0.6125
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10039343 [exp]	35.1	0.6683
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10003848 [exp]	43.4	0.6300
AT3G61040		CYP76C7	"cytochrome P450, family 76, s...		Lus10027425 [exp]	47.0	0.6087

Compare expression of checked genes

Lus10013609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.