Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59480 559 / 0 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 555 / 0 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 547 / 0 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 544 / 0 STH pfkB-like carbohydrate kinase family protein (.1) AT4G10260 452 / 6e-161 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 437 / 5e-154 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 413 / 3e-145 pfkB-like carbohydrate kinase family protein (.1) AT1G50390 226 / 1e-74 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 182 / 2e-53 FLN1 fructokinase-like 1 (.1) AT1G69200 154 / 5e-42 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026865 [exp] 667 / 0 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 610 / 0 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 485 / 6e-175 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 430 / 3e-152 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 424 / 2e-149 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 421 / 8e-148 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 414 / 2e-145 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 411 / 8e-144 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 369 / 7e-129 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G029000 [exp] 578 / 0 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 553 / 0 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 451 / 2e-160 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 447 / 5e-158 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 421 / 7e-148 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 414 / 1e-145 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 409 / 2e-143 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 166 / 1e-46 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 163 / 2e-46 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.011G114100 [exp] 79 / 3e-16 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10013611 pacid=23171624 polypeptide=Lus10013611 locus=Lus10013611.g ID=Lus10013611.BGIv1.0 annot-version=v1.0 ATGGCATTCTCTAATGGCGGCTCAGACTCCTCCTCTCTCATCGTCAGCTTCGGCGAGATGCTCATCGACTTCGTCCCCACCGTTTCCGGTGTCTCCCTCG CCGAGGCTCCCGGTTTCATCAAGGCTCCCGGCGGCGCCCCCGCCAATGTCGCGATCGCCGTCGCCAGACTCGGCGGAAAGGCCGCGTTCGTTGGAAAGCT CGGAGACGACGAGTTCGGCCGCATGCTGGCTGGGATCTTGAAGGAGAATGCCGTGATCGTAGACGGCATCAACTTCGACAAGGGAGCCAGGACCGCCCTT GCGTTCGTCACTCTGAAGGCTGATGGAGATCGCGAGTTCATGTTCTACCGGAATCCCAGCGCCGACATGCTTCTCCAACCGGAGGAACTCAATCTTGAGC TCATTAGATCTGCCAAAGTTTTCCACTACGGATCAATAAGCTTGATAGTGGAGCCATGCAGATCAGCACACATGAAGGCAATGGAGGCTGCGAAAGATGC AGGTGCGCTTCTTTCTTACGACCCAAATCTGAGGCTCCCATTGTGGCCTTCACCAGAGGAGGCAAGGGAGCAGATACTTAGCATATGGGACAAGGCAGAG ATAATCAAGGTGAGCGACGTGGAGCTTGAATTCCTCACAGGAAGTGACAAGATTGATGATGCCTCCGCCATGTCACTCTGGCATGACAACTTGAAGTTGC TCTTGGTCACCCTTGGTGAAAAGGGTTGCAGGTATTACACCAAGAGTTTCCATGGATCAGTGGATGCATTCCAAGTGAATACAGTGGATACAACAGGTGC TGGTGATTCCTTTGTGGGTGCTCTTCTTACCAAGATTGTGGATGACCAGTCCGTTATTCAGGAGGAAGCAAGACTGAGGGAAGTGCTGAAATTTGCAAAT GCGTGTGGGGCAATCACAACAACCAAGAAGGGAGCAATCCCAGCCCTTCCCACTGAAGCTGATTCTCTTGCACTCATCAAATCATCCTCTCAGTAA
AA sequence Show only first row Show all	>Lus10013611 pacid=23171624 polypeptide=Lus10013611 locus=Lus10013611.g ID=Lus10013611.BGIv1.0 annot-version=v1.0 MAFSNGGSDSSSLIVSFGEMLIDFVPTVSGVSLAEAPGFIKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGRMLAGILKENAVIVDGINFDKGARTAL AFVTLKADGDREFMFYRNPSADMLLQPEELNLELIRSAKVFHYGSISLIVEPCRSAHMKAMEAAKDAGALLSYDPNLRLPLWPSPEEAREQILSIWDKAE IIKVSDVELEFLTGSDKIDDASAMSLWHDNLKLLLVTLGEKGCRYYTKSFHGSVDAFQVNTVDTTGAGDSFVGALLTKIVDDQSVIQEEARLREVLKFAN ACGAITTTKKGAIPALPTEADSLALIKSSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10013611 [exp]	0	1
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10026865 [exp]	1.0	0.9865
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	1.7	0.9739
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	3.5	0.9771
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	5.8	0.9546
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	6.0	0.9737
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10014238 [exp]	6.7	0.9674
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	8.5	0.9635
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Lus10035843 [exp]	9.3	0.9500
AT5G66120			3-dehydroquinate synthase, put...		Lus10041882 [exp]	9.5	0.9633
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10024589 [exp]	10.2	0.9567

Compare expression of checked genes

Lus10013611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.