Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03810 845 / 0 EDA30 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) AT3G30300 528 / 2e-180 O-fucosyltransferase family protein (.1) AT1G04910 171 / 6e-46 O-fucosyltransferase family protein (.1) AT1G22460 170 / 2e-45 O-fucosyltransferase family protein (.1) AT3G02250 165 / 4e-44 O-fucosyltransferase family protein (.1) AT5G15740 162 / 5e-43 RRT1 O-fucosyltransferase family protein (.1) AT5G64600 162 / 9e-43 O-fucosyltransferase family protein (.1) AT3G26370 154 / 1e-39 O-fucosyltransferase family protein (.1) AT2G01480 153 / 1e-39 O-fucosyltransferase family protein (.1) AT1G11990 153 / 2e-39 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010654 [exp] 1268 / 0 AT3G03810 840 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Lus10034356 [exp] 556 / 0 AT3G30300 895 / 0.0 O-fucosyltransferase family protein (.1) Lus10005094 [exp] 555 / 0 AT3G30300 887 / 0.0 O-fucosyltransferase family protein (.1) Lus10037830 [exp] 184 / 2e-50 AT1G04910 851 / 0.0 O-fucosyltransferase family protein (.1) Lus10017105 [exp] 177 / 2e-47 AT1G04910 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10032603 [exp] 174 / 3e-47 AT1G04910 845 / 0.0 O-fucosyltransferase family protein (.1) Lus10019196 [exp] 159 / 1e-41 AT5G15740 541 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 158 / 2e-41 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 157 / 2e-41 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G056200 [exp] 895 / 0 AT3G03810 845 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.019G036600 [exp] 886 / 0 AT3G03810 885 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.004G113200 [exp] 556 / 0 AT3G30300 886 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101600 [exp] 555 / 0 AT3G30300 917 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G316800 [exp] 182 / 3e-50 AT1G04910 847 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G057300 [exp] 179 / 4e-49 AT1G04910 828 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 176 / 6e-48 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 168 / 4e-45 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 160 / 2e-42 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 160 / 2e-42 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10013612 pacid=23171572 polypeptide=Lus10013612 locus=Lus10013612.g ID=Lus10013612.BGIv1.0 annot-version=v1.0 ATGATGCTGTTCAAATCCAGGATCAAATGGATAGTTCTGTTGGTGTTGATGCTATCCACTGGATCCCTAGTCGTTCATCTCTCAATTACCAAGTTCTCCG CCACTAATTTGGTTCAGTTCACTCCCGCCCCCGCTCTTCGCCTTGATTTCCCTTCTTCTCCTGGATCCAAGCGAGTTGTAACTGTTAGAAACAAGAAGCT GTGGGGTCCTGTTAAGCCCTTGGAGTCATTGCAGCCTTATGCCAACCCAAGAAGCACCTACCCTGCCCCAACTGAAAATAACAACGGTTACATATATGCA AAGCTTTATGGTGGGTTTTCAAAGATAAGATCTTCGATATGTGATCTTGTCACCATAACCAGGCTTCTAAATGCTACTCTTGTCATTCCAGAGATTCAAG ATAGTCTGCGCTCAAAAGGCATTAGTAACAAATTCAAGAGTTTTTCTTATCTCTATGATGAGGACCAGTTCATAGCTTCACTTAAAAATGATGTGAGAGT TGTGAAGAGCTTGCCCGAGAATTTGAAGGCAGCTAGGAAAAGGAACGAGTTTCCCATCTTTAAGCCCAAAAGTTCTGCTACGATAAGTTTCTACGTCAAA GAAATTTTGCCTAAACTGAGGAAATCGAAAGTAGTTGGTCTGATTTTGGCTGATGGAGGCTGTCTGCAGTCAGTTCTTCCACCCAGCATGGCTGAGTTTC AGAGGCTAAGATGCCGAGTAGGCTTTCATGCACTTCAATTCCGCCAAGATCTTAAACTACTGGGCCATAGGATTGTTGAGAGATTGCGACAATGGGGTCC GCCTTACATTGCATATCATCCTGGCTTAGATGTGCACTCTGAACTCATACAATATCGAAGGGCACAGTTCATCAAGAGAGGGATGCTTACTGACAAGCTT AGTGTTGACTCGCACATACGCAGAGACAATGGGTCATGCCCCCTAATGCCTGAAGAGGTCGGACTTCTTCTTCGAGCAATGGGCTACCGTCCTAATACAA TTATATATGTGGCTGGGTCTGAAACTTTTGGTGGTCAACGACTTCTGATCCCCCTGCGTGCAATGTTTGCAAACTTGGTGGATTATACCTCATTTTGTAG CAAACAAGAGTTGTCTGATTTACTTGGTCCTGAAACTCTTTTGCCTCCAAACCCATTTAAAGTACGAGTTGTTAAAAGTGATGAACAACTTAAAGAAGAG TGGAAAAGAGCAGGGCCTAGACCACGGCCTTTGCCTCCACCTCCAGACAGGCCTATCTATCAACATGAAAAAGAAGGTTGGTATGGTTGGATAACGGAAA CTGACACTGAACCAGAACCTTCACCAGCAGATCTGAGGATGCAAGCGCACAGGCTATTGTGGGATGCTCTTGATTACATTGTATCTTTGGAAGCGGATGC TTTTTTTCCCGGTTTCAATAATGATGGTAGTAAATGGCCAGATTTCTCAAGTCTGGTCATGGGACAGCGGCTCTACGAGAGTCCTTCTTCCAGAACAGTT CGACCAGATAGGAAAATTATTCAGACAGCTTTCAAATTGATTCGCGATGATATGTACCATCCGAAATACAATTGGAGCGTTTCAGTAAGGGAACATCTAA ACAAAAGTTTTGGTGTGGATGGGCTTGGGAGGCAGTCACAGTGGTCAAAACCTACTTCATTCCTTTCCCACCCATTTCCTGAATGCTCGTGTAGAATGTC ATCATCAGGTGGTGTTCCAATCATACTGAAAGACAAAGAGGGGAGAACAGTTGTCGGAGGTGAGGACGAGTGTCCGAAATGGATGGAGAGCAATCAAGGA TTTGTGGTAGTTGAATCTTTAGCAGCTGAAGGGGGTTCCAACGAGGATGTGGAATCAGAGTATGAAAATGAAACGCAGGATCTGGATGCTAATAATAACA AGAGTAGCTTAACCCTAGCCATGGACCAGGATGATGAATGGGATCCCAATGACTAA
AA sequence Show only first row Show all	>Lus10013612 pacid=23171572 polypeptide=Lus10013612 locus=Lus10013612.g ID=Lus10013612.BGIv1.0 annot-version=v1.0 MMLFKSRIKWIVLLVLMLSTGSLVVHLSITKFSATNLVQFTPAPALRLDFPSSPGSKRVVTVRNKKLWGPVKPLESLQPYANPRSTYPAPTENNNGYIYA KLYGGFSKIRSSICDLVTITRLLNATLVIPEIQDSLRSKGISNKFKSFSYLYDEDQFIASLKNDVRVVKSLPENLKAARKRNEFPIFKPKSSATISFYVK EILPKLRKSKVVGLILADGGCLQSVLPPSMAEFQRLRCRVGFHALQFRQDLKLLGHRIVERLRQWGPPYIAYHPGLDVHSELIQYRRAQFIKRGMLTDKL SVDSHIRRDNGSCPLMPEEVGLLLRAMGYRPNTIIYVAGSETFGGQRLLIPLRAMFANLVDYTSFCSKQELSDLLGPETLLPPNPFKVRVVKSDEQLKEE WKRAGPRPRPLPPPPDRPIYQHEKEGWYGWITETDTEPEPSPADLRMQAHRLLWDALDYIVSLEADAFFPGFNNDGSKWPDFSSLVMGQRLYESPSSRTV RPDRKIIQTAFKLIRDDMYHPKYNWSVSVREHLNKSFGVDGLGRQSQWSKPTSFLSHPFPECSCRMSSSGGVPIILKDKEGRTVVGGEDECPKWMESNQG FVVVESLAAEGGSNEDVESEYENETQDLDANNNKSSLTLAMDQDDEWDPND

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03810		EDA30	embryo sac development arrest ...		Lus10013612 [exp]	0	1
AT1G63430			Leucine-rich repeat protein ki...		Lus10008018 [exp]	2.2	0.7127
AT2G34930			disease resistance family prot...		Lus10041266 [exp]	8.5	0.6747
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10026447 [exp]	12.1	0.6646
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035741 [exp]	12.6	0.7229
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	13.3	0.7195
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	14.1	0.6974
AT5G65290			LMBR1-like membrane protein (....		Lus10035927 [exp]	24.0	0.6759
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	30.2	0.6435
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Lus10035085 [exp]	32.0	0.6251
AT5G67140			F-box/RNI-like superfamily pro...		Lus10024178 [exp]	35.8	0.7065

Compare expression of checked genes

Lus10013612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.