Plant FIBer expression Database

Lus10013613 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64850 187 / 1e-61 Calcium-binding EF hand family protein (.1)
AT4G37445 44 / 6e-06 unknown protein
AT2G41200 39 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010653
[exp]
273 / 3e-95 AT1G64850 245 / 3e-84 Calcium-binding EF hand family protein (.1)
Lus10001408
[exp]
54 / 1e-09 AT4G37445 214 / 6e-72 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G072600
[exp]
195 / 1e-64 AT1G64850 250 / 3e-86 Calcium-binding EF hand family protein (.1)
Potri.007G051200
[exp]
42 / 3e-05 AT4G37445 160 / 7e-51 unknown protein
PFAM info
Representative CDS sequence
>Lus10013613 pacid=23171600 polypeptide=Lus10013613 locus=Lus10013613.g ID=Lus10013613.BGIv1.0 annot-version=v1.0
ATGGGCCAAGTCCTCGATAGGTTCCAAGGTAAGGAATGGAAAAGGAAGCAAGTGAAGTTGATAACTGACAGGGTATATGATCGAATCTGTTCTCAATCAG
GAAGATCTTATCTGACTTTTGACGATCTCTACATTGCTGTGTTGCTCGTCTTCAATGACATTAACAAGCGCTTGCCAGGTCCCCATTTCGATCCACCCTC
CAAAGACCGTGTCAGGGAGATCATTAAGGAATGTGATATCGACCTTGATGGCGGGCTTGACCGTGAAGAGTTTGCCAAGTTCATGAAGCAGCTAACAGCA
GAGACAATTGTTGTAGTAAGTCAAGGACTTCTGGTCACCCTAGTTGTGGCACCAACGGTTGCAATGGCTACCAAAAGAGCCACAGAGGGTGTTCCAGGGG
TTGGGAAGGTTGTGCAGAAGGTTCCGACTTCAGTATTTGCCTCGCTCGTCACTCTTGCTGTTGTTTGGTTTCAGCACTCAGACCACGAAGCTGTGTAG
AA sequence
>Lus10013613 pacid=23171600 polypeptide=Lus10013613 locus=Lus10013613.g ID=Lus10013613.BGIv1.0 annot-version=v1.0
MGQVLDRFQGKEWKRKQVKLITDRVYDRICSQSGRSYLTFDDLYIAVLLVFNDINKRLPGPHFDPPSKDRVREIIKECDIDLDGGLDREEFAKFMKQLTA
ETIVVVSQGLLVTLVVAPTVAMATKRATEGVPGVGKVVQKVPTSVFASLVTLAVVWFQHSDHEAV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G64850 Calcium-binding EF hand family... Lus10013613
[exp]
0 1
AT3G12350 F-box family protein (.1.2) Lus10010607
[exp]
2.4 0.8141
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Lus10042470
[exp]
6.8 0.8219
AT4G10300 RmlC-like cupins superfamily p... Lus10035659
[exp]
7.8 0.8430
AT4G09620 Mitochondrial transcription te... Lus10009420
[exp]
8.5 0.8102
AT5G57040 Lactoylglutathione lyase / gly... Lus10021573
[exp]
10.6 0.8196
AT5G57040 Lactoylglutathione lyase / gly... Lus10021574
[exp]
19.4 0.8209
AT1G61600 Protein of unknown function (D... Lus10035379
[exp]
20.6 0.8183
AT2G26520 unknown protein Lus10020993
[exp]
21.0 0.7634
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Lus10026198
[exp]
27.0 0.8073
AT5G17230 PSY PHYTOENE SYNTHASE (.1.2.3) Lus10020729
[exp]
28.4 0.8123

Lus10013613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.