Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03890 362 / 3e-121 FMN binding (.1.2) AT3G21140 81 / 4e-16 Pyridoxamine 5'-phosphate oxidase family protein (.1) AT1G51560 77 / 1e-14 Pyridoxamine 5'-phosphate oxidase family protein (.1) AT3G21200 45 / 0.0001 PGR7 proton gradient regulation 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010649 [exp] 515 / 0 AT3G03890 409 / 9e-144 FMN binding (.1.2) Lus10034828 [exp] 74 / 8e-14 AT1G51560 508 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10033378 [exp] 74 / 1e-13 AT1G51560 483 / 9e-171 Pyridoxamine 5'-phosphate oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G035200 [exp] 394 / 2e-133 AT3G03890 452 / 4e-161 FMN binding (.1.2) Potri.013G057700 [exp] 377 / 1e-127 AT3G03890 429 / 6e-153 FMN binding (.1.2) Potri.008G006400 [exp] 76 / 2e-14 AT1G51560 533 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.010G252300 [exp] 72 / 3e-13 AT1G51560 561 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.010G250200 [exp] 50 / 2e-06 AT3G21200 419 / 3e-148 proton gradient regulation 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0336 [flax] [poplar] FMN-binding PF01243 [flax] [poplar] Putative_PNPOx Pyridoxamine 5'-phosphate oxidase CL0336 [flax] [poplar] PF10615 [flax] [poplar] DUF2470 Protein of unknown function (DUF2470)
Representative CDS sequence Show only first row Show all	>Lus10013617 pacid=23171597 polypeptide=Lus10013617 locus=Lus10013617.g ID=Lus10013617.BGIv1.0 annot-version=v1.0 ATGATGGCATCGGCTAGTTGTTGCACAATGAGGGCAGCTGCAGTAGCGTCAACCAGGCTTCATTTCACCTCTCAGTTTCTCCAACCATACATCTCCTTTC CATCATTCCCCTCTGTTCTCTCTTCTTCCTTCTCCTTCTCTCCTTCTTCTACTCGTCGATCTCTCGCTATGTCTGCAGCTCCACCTCAGTCCTCCTCTCC TCCTAAGGCTGCATCTGCTGGGGGAATTGGCGGCGAGGAGAATCTTTTAATGTTGATAAAAACTCACCAGGAAAATGCTGCTCGGCTTCCCCCTGTTGAG GAAATCAGGACAGTCCTTAGCCATAGTGTGCGTGGCATGCTCTCAACCTTCTCTCAGAAATACGATGGTTATCCGTCTGGATCGATGCTTGATTTTGCAT CTGATGTAGATGGGTCTATAATCTTGGCTGTCAGTTCCTTGTCAGTTCATTCTAAGGACCTGTCAGCTAATCCAAAGTGCTCCTTGCTTGTTGCTAGAGA TCCCGAGGACAGGAATGATCTGGTTATCACTGTGCATGGGGATGCTATTCCTGTCTCTAAGCAAGATACAGCTACCACAAGAACTGCATATTTGGCCAAA CATCCTAATGCATTCTGGGTTGACTTTGGGGACTTCCAATTTTTAAGGATTGAGCCAAAGGTAGTGCGATATGTGTCGGGAGTTGCAACTGCATTGCTTC AGTCTGGAGAGTTTACCAAAGACGAGTTTCAATCTGCAAAAGTGGATCCTATATCCCAATTTGCAAAGCCTATTACATCCCACATGAACAGAGATCATGG TGAAGATACAAAACTGATTGTGAAACACTCAACTTCAATTCCGGTGGATTCCGCTTATATGCTAGATGTGGATAGTTTTGGATTCAATGTCAAGATGATG GCATCGGCTAGTTGTTGCACAATGAGGGCAGCTGCAGTAGCGTCAACCAGGCTTCATTTCACCTCTCAGTTTCTCCAACCATACATCTCCTTTCCATCAT TCCCCTCTGTTCTCTCTTCTTCCTTCTCCTTCTCTCCTTCTTCTACTCGTCGATCTCTCGCTATGTCTGCAGCTCCACCTCAGTCCTCCTCTCCTCCTAA GGCTGCATCTGCTGGGGGAATTGGCGGCGAGGAGAATCTTTTAATGTTGATAAAAACTCACCAGGAAAATGCTGCTCGGCTTCCCCCTGTTGAGGAAATC AGGACAGTCCTTAGCCATAGTGTGCGTGGCATGCTCTCAACCTTCTCTCAGAAATACGATGGTTATCCGTCTGGATCGATGCTTGATTTTGCATCTGATG TAGATGGGTCTATAATCTTGGCTGTCAGTTCCTTGTCAGTTCATTCTAAGGACCTGTCAGCTAATCCAAAGTGCTCCTTGCTTGTTGCTAGAGATCCCGA GGACAGGAATGATCTGGTTATCACTGTGCATGGGGATGCTATTCCTGTCTCTAAGCAAGATACAGCTACCACAAGAACTGCATATTTGGCCAAACATCCT AATGCATTCTGGGTTGACTTTGGGGACTTCCAATTTTTAAGGATTGAGCCAAAGGTAGTGCGATATGTGTCGGGAGTTGCAACTGCATTGCTTCAGTCTG GAGAGTTTACCAAAGACGAGTTTCAATCTGCAAAAGTGGATCCTATATCCCAATTTGCAAAGCCTATTACAGTGGATTCCGCTTATATGCTAGATGTGGA TAGTTTTGGATTCAATGTCAAGGCTATTTATCAGGGTAAGACTTACAAGCTCAGAATTCCTTTCCCTAGGCGTGCAGAAGATAGAAAGGATGTGAAAACC TTAATTGTGGAAATGCTACAAGCTAGCAGCGGCCAGAGCTGA
AA sequence Show only first row Show all	>Lus10013617 pacid=23171597 polypeptide=Lus10013617 locus=Lus10013617.g ID=Lus10013617.BGIv1.0 annot-version=v1.0 MMASASCCTMRAAAVASTRLHFTSQFLQPYISFPSFPSVLSSSFSFSPSSTRRSLAMSAAPPQSSSPPKAASAGGIGGEENLLMLIKTHQENAARLPPVE EIRTVLSHSVRGMLSTFSQKYDGYPSGSMLDFASDVDGSIILAVSSLSVHSKDLSANPKCSLLVARDPEDRNDLVITVHGDAIPVSKQDTATTRTAYLAK HPNAFWVDFGDFQFLRIEPKVVRYVSGVATALLQSGEFTKDEFQSAKVDPISQFAKPITSHMNRDHGEDTKLIVKHSTSIPVDSAYMLDVDSFGFNVKMM ASASCCTMRAAAVASTRLHFTSQFLQPYISFPSFPSVLSSSFSFSPSSTRRSLAMSAAPPQSSSPPKAASAGGIGGEENLLMLIKTHQENAARLPPVEEI RTVLSHSVRGMLSTFSQKYDGYPSGSMLDFASDVDGSIILAVSSLSVHSKDLSANPKCSLLVARDPEDRNDLVITVHGDAIPVSKQDTATTRTAYLAKHP NAFWVDFGDFQFLRIEPKVVRYVSGVATALLQSGEFTKDEFQSAKVDPISQFAKPITVDSAYMLDVDSFGFNVKAIYQGKTYKLRIPFPRRAEDRKDVKT LIVEMLQASSGQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03890			FMN binding (.1.2)		Lus10013617 [exp]	0	1
AT2G45530			RING/U-box superfamily protein...		Lus10000211 [exp]	2.0	0.8500
AT5G35460			unknown protein		Lus10021569 [exp]	3.3	0.8697
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10025213 [exp]	3.6	0.8207
AT2G25800			Protein of unknown function (D...		Lus10012969 [exp]	3.9	0.8498
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	5.5	0.8661
AT5G01800			saposin B domain-containing pr...		Lus10022750 [exp]	6.0	0.8678
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	9.0	0.8321
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	9.2	0.8438
					Lus10037807 [exp]	9.5	0.8292
AT3G24740			Protein of unknown function (D...		Lus10011876 [exp]	10.7	0.8111

Compare expression of checked genes

Lus10013617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.