Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17600 209 / 2e-65 RING/U-box superfamily protein (.1) AT3G03550 196 / 1e-60 RING/U-box superfamily protein (.1) AT4G17905 155 / 4e-45 ATL4H RING/U-box superfamily protein (.1) AT1G72220 116 / 1e-29 RING/U-box superfamily protein (.1) AT1G04360 113 / 1e-28 RING/U-box superfamily protein (.1) AT4G33565 112 / 2e-28 RING/U-box superfamily protein (.1) AT5G43420 111 / 4e-28 RING/U-box superfamily protein (.1) AT5G10380 108 / 3e-27 ATRING1, RING1 RING/U-box superfamily protein (.1) AT2G20030 96 / 2e-22 RING/U-box superfamily protein (.1) AT4G28890 96 / 4e-22 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015901 [exp] 125 / 3e-33 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10037264 [exp] 121 / 7e-32 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10012745 [exp] 118 / 5e-31 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10035677 [exp] 111 / 5e-28 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10034953 [exp] 102 / 1e-24 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10012975 [exp] 100 / 8e-24 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10006493 [exp] 96 / 9e-23 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10000333 [exp] 94 / 2e-21 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10004460 [exp] 94 / 2e-21 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073500 [exp] 223 / 5e-71 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 208 / 4e-66 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 198 / 4e-61 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 196 / 2e-60 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 132 / 1e-35 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 120 / 2e-31 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 118 / 1e-30 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 115 / 3e-29 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 114 / 8e-29 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 104 / 1e-25 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10013618 pacid=23171598 polypeptide=Lus10013618 locus=Lus10013618.g ID=Lus10013618.BGIv1.0 annot-version=v1.0 ATGAGCTCTTCGACCAACCAATTCCCGCCATGGCCACCGTACGAAACTTACAGAGACTGCTCCCAAGGAATCTGCAACATCTACTGTCCCCAATGGTGCT ACTTAATGTTCCCTCCCCCTCCTCCTTCTCGCCAATTCTCCTCCGCCAACGACTCAGACGGCGGCGACTCCTCCTCCGACTTCTCCCCTCTAATCATAGC AGTTATCGGAATACTCGCCAGCGCCTTCATCCTAATCACTTACTACACCATCATCTCCAAGTACTGCCGCCGTCGACGTGGCCGCACCGCAATCGACGAA ATTCGCGACCACCACAACGCTGGTGATCCAAACAGCAGCTGGATGACCTCATCAGCCGTCGGATTAGAGGAATCCGTGATTAAATCAATCACGGTGTTGA ATTACCGGAAGGATGATGGAGTTGTGGAAGGCTCGGATTGCTCTGTTTGCCTCAGCGAGTTTGAAGAAGAGGAGAAAATTAGGTTGTTGCCCCAATGCCA CCACGCTTTCCATGTGCCTTGCATTGACGCCTGGCTCAAATCCCACGCCACTTGCCCTCTCTGCCGCGCCAATATCAACGGATCGGCCGACTCATCACCA TCCTCTGCTGTTGTTGTTAGGTCTATTCCACTTCCGCCAGAGGAGGCGGAGCAGCAGATGGTGGTGACCCTGCCTCCACTGGTTTTAAGTGAGATTACGG CGGCGGTGGAGGTTGATGATATTGAGTGCGGCGGCCAATCGGAAGAAAGTGAAGATCGTGAACGAGTATCGGAGATGAGGAGATCGAGCTCGTTGAATTT TGAGGGGGTGCCGGTGAGGATGATGAAGAGATCAGTTTCGACTGGGAGATTTGTGTTAATGTCGAGAGATGGTAATTCTTCTTCCAATACCATTCCAGTT TGA
AA sequence Show only first row Show all	>Lus10013618 pacid=23171598 polypeptide=Lus10013618 locus=Lus10013618.g ID=Lus10013618.BGIv1.0 annot-version=v1.0 MSSSTNQFPPWPPYETYRDCSQGICNIYCPQWCYLMFPPPPPSRQFSSANDSDGGDSSSDFSPLIIAVIGILASAFILITYYTIISKYCRRRRGRTAIDE IRDHHNAGDPNSSWMTSSAVGLEESVIKSITVLNYRKDDGVVEGSDCSVCLSEFEEEEKIRLLPQCHHAFHVPCIDAWLKSHATCPLCRANINGSADSSP SSAVVVRSIPLPPEEAEQQMVVTLPPLVLSEITAAVEVDDIECGGQSEESEDRERVSEMRRSSSLNFEGVPVRMMKRSVSTGRFVLMSRDGNSSSNTIPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17600			RING/U-box superfamily protein...		Lus10013618 [exp]	0	1
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029232 [exp]	2.6	0.8849
AT1G48780			unknown protein		Lus10009633 [exp]	6.8	0.8994
AT5G26330			Cupredoxin superfamily protein...		Lus10041211 [exp]	9.9	0.9146
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	10.6	0.8803
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10031640 [exp]	11.2	0.8785
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10028650 [exp]	12.2	0.8424
AT1G04360			RING/U-box superfamily protein...		Lus10021197 [exp]	16.0	0.8939
AT1G24030			Protein kinase superfamily pro...		Lus10029187 [exp]	18.0	0.8934
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10033908 [exp]	20.0	0.8600
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10023576 [exp]	21.9	0.8600

Compare expression of checked genes

Lus10013618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.