Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032459 [exp] 135 / 1e-36 AT3G18180 283 / 2e-88 Glycosyltransferase family 61 protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013619 pacid=23171583 polypeptide=Lus10013619 locus=Lus10013619.g ID=Lus10013619.BGIv1.0 annot-version=v1.0 ATGGTTGATTCTTCTTCATCAGCTAAATCCTCGCAGTCTCCAGTGTCTCCAGTGGTGCGAGGATCTGAAGCTAGTGGGGAGTCCCCATTTCCCAAGGACA CTAGCGTGGCTGTGGATGGAGCGGGAACAGATAGCATAGTTGAAGCTCCATTGAAAGTAGAGACTAGTGTTGATGTTCAACAGGATCTGGGGGCTAAAAA TCCTCTGCAAGTGGAGGTCTCCAGCCTGTGCCCTGATGAAAATTTGGCAATGTGTCAATCTGAAGAAGTGGTATCACTGGTTGTGCATAATGTGTTGGAA GAGACAACTGATGAATGTGAGCAAGATCTAGTGGATGAAGAGATTGCTCTGGAAAATCCAGATGGATCCCCTGTTATTCGTACTTATGGGCAAGCGATTC TTGGTAATTTCATTACTAAAGGGAGTCTTCCTCCCGCAAAGGCCCTAGAGGTAGGAAAAGGGGAAGTCCTGAAGGTTGCTGAAAAACATTCAGGAGAAAC CTCCGACTCTCTTTCGTCTCGTCTGTTGTGGAGAGCTGCTTACAACAACGTTTGGTATGAACGTTGCAGGCGAAAAGCTGGGGAGAAATCGATTCTAGCG CTTGATATTGCTAGAGATATTTGTAGAGATACGAAGAGAGTTTTGTAG
AA sequence Show only first row Show all	>Lus10013619 pacid=23171583 polypeptide=Lus10013619 locus=Lus10013619.g ID=Lus10013619.BGIv1.0 annot-version=v1.0 MVDSSSSAKSSQSPVSPVVRGSEASGESPFPKDTSVAVDGAGTDSIVEAPLKVETSVDVQQDLGAKNPLQVEVSSLCPDENLAMCQSEEVVSLVVHNVLE ETTDECEQDLVDEEIALENPDGSPVIRTYGQAILGNFITKGSLPPAKALEVGKGEVLKVAEKHSGETSDSLSSRLLWRAAYNNVWYERCRRKAGEKSILA LDIARDICRDTKRVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013619 [exp]	0	1
AT1G49960			Xanthine/uracil permease famil...		Lus10006134 [exp]	2.4	0.8686
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	5.9	0.8939
AT5G14230			unknown protein		Lus10036990 [exp]	9.2	0.8727
AT5G37690			SGNH hydrolase-type esterase s...		Lus10018641 [exp]	10.4	0.8715
AT5G37690			SGNH hydrolase-type esterase s...		Lus10039877 [exp]	11.4	0.8703
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	11.5	0.8764
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009029 [exp]	13.0	0.8650
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Lus10039436 [exp]	14.5	0.8365
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	18.1	0.8652
AT5G14230			unknown protein		Lus10036989 [exp]	20.4	0.8341

Compare expression of checked genes

Lus10013619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.