Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39890 224 / 1e-72 Protein of unknown function (DUF1637) (.1) AT5G15120 213 / 1e-67 Protein of unknown function (DUF1637) (.1) AT1G18490 180 / 4e-55 Protein of unknown function (DUF1637) (.1) AT3G58670 163 / 5e-49 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) AT2G42670 154 / 2e-45 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003861 [exp] 575 / 0 AT5G39890 229 / 4e-74 Protein of unknown function (DUF1637) (.1) Lus10015360 [exp] 198 / 1e-61 AT5G39890 316 / 6e-108 Protein of unknown function (DUF1637) (.1) Lus10038962 [exp] 183 / 4e-56 AT1G18490 332 / 1e-114 Protein of unknown function (DUF1637) (.1) Lus10027254 [exp] 180 / 6e-55 AT1G18490 324 / 1e-111 Protein of unknown function (DUF1637) (.1) Lus10033603 [exp] 171 / 7e-52 AT3G58670 385 / 3e-137 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10020711 [exp] 167 / 1e-50 AT3G58670 386 / 8e-138 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10017645 [exp] 167 / 1e-50 AT3G58670 390 / 2e-139 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10029828 [exp] 158 / 6e-45 AT3G58670 322 / 4e-109 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G038851 [exp] 341 / 2e-118 AT5G39890 225 / 6e-73 Protein of unknown function (DUF1637) (.1) Potri.013G064200 [exp] 313 / 2e-107 AT5G15120 238 / 4e-78 Protein of unknown function (DUF1637) (.1) Potri.004G129400 [exp] 215 / 1e-68 AT5G39890 338 / 1e-117 Protein of unknown function (DUF1637) (.1) Potri.017G079400 [exp] 196 / 1e-61 AT5G39890 300 / 4e-103 Protein of unknown function (DUF1637) (.1) Potri.015G055600 [exp] 191 / 2e-59 AT1G18490 341 / 2e-118 Protein of unknown function (DUF1637) (.1) Potri.012G057400 [exp] 186 / 1e-57 AT1G18490 329 / 3e-114 Protein of unknown function (DUF1637) (.1) Potri.004G058000 [exp] 169 / 1e-51 AT3G58670 320 / 1e-111 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Potri.011G067300 [exp] 169 / 2e-51 AT2G42670 316 / 8e-110 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF07847 [flax] [poplar] PCO_ADO PCO_ADO
Representative CDS sequence Show only first row Show all	>Lus10013620 pacid=23171630 polypeptide=Lus10013620 locus=Lus10013620.g ID=Lus10013620.BGIv1.0 annot-version=v1.0 ATGACGATTGAAGCAGTGGCGGAGTCGAGAAGCGACCAAGTTATTACTAGACATATGAAAAGGGTAGGGTACGGTGGCCGCAGACTTGTTGATAGAAAGA GAGGTTGGAAGAAGAAGGTTAAGAGGTCACCACCAACCCTCCCTTCCTTTTCGTTTGTGCTGCAGAATCTTTTCCAGTCTTGTAAACAAGTTTTCAAAGG TCCTGGCACCATTCCTCTACCTCCAGATGTTAATACCTTGTGCCATATACTTGACAATATGCAGCCAGAGGATGTTGGGTTGAGTAGCAAGTTGCAGTTC TTTAATCCTAAAACAGTATTCCAAGGCACTGCTCCTAAAGTCTGCTATACAACCATTTACGAATGCACCAACTTCTCGATGTGCATTTTTTTCCTCCCTG CTGGTGGCGTTATCCCTCTCCACAACCATCCTGAGATGACAGTGTTCAGCAAACTTTTGTTAGGACAAGTCCACATCAAATCCTACGACTTGGATAGCTG TGATTCTACTCCGTGCCATAACGATCCAGCTTCCTCTCGAAAACTGAGGCTGGCGGAGTTGGTAGCCGATAAGGACTACAGTGCTCCTTGTGACACATCA GTACTATATCCAACAACAGGAGGTAACATTCATCAGTTCACAGCACTTACTCCTTGCGCCATCCTCGATGTCATTGGTCCTCCTTACTCTGTGGAAGATG GACGCGATTGCTCTTACTACCAAGATTTTGCTTACCAAGCCTTTTCCGGGAATGAAGAGCAGGGAATGAGTGAAGAGGAAGGAAGGAAATATGGATGGTT GGAAGAGGTAGAAATGCCGGAGAATTCAGAAATGGATGGGATTGAGTATCTAGGTCCACAGGTTGTTGACAGAGGAACCACCTGCTGCTGA
AA sequence Show only first row Show all	>Lus10013620 pacid=23171630 polypeptide=Lus10013620 locus=Lus10013620.g ID=Lus10013620.BGIv1.0 annot-version=v1.0 MTIEAVAESRSDQVITRHMKRVGYGGRRLVDRKRGWKKKVKRSPPTLPSFSFVLQNLFQSCKQVFKGPGTIPLPPDVNTLCHILDNMQPEDVGLSSKLQF FNPKTVFQGTAPKVCYTTIYECTNFSMCIFFLPAGGVIPLHNHPEMTVFSKLLLGQVHIKSYDLDSCDSTPCHNDPASSRKLRLAELVADKDYSAPCDTS VLYPTTGGNIHQFTALTPCAILDVIGPPYSVEDGRDCSYYQDFAYQAFSGNEEQGMSEEEGRKYGWLEEVEMPENSEMDGIEYLGPQVVDRGTTCC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39890			Protein of unknown function (D...		Lus10013620 [exp]	0	1
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10008643 [exp]	1.0	0.9835
AT5G39890			Protein of unknown function (D...		Lus10015360 [exp]	3.5	0.9571
AT4G10265			Wound-responsive family protei...		Lus10018531 [exp]	4.9	0.9563
AT5G26200			Mitochondrial substrate carrie...		Lus10026468 [exp]	5.5	0.9144
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	6.6	0.9423
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10017045 [exp]	6.6	0.9526
AT5G08570			Pyruvate kinase family protein...		Lus10013450 [exp]	6.9	0.9466
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10017249 [exp]	6.9	0.9224
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10015451 [exp]	10.5	0.9432
AT4G24110			unknown protein		Lus10001676 [exp]	11.2	0.9476

Compare expression of checked genes

Lus10013620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.