Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03750 276 / 3e-91 SUVR3, SDG20 SET domain protein 20 (.1.2) AT2G23740 100 / 5e-23 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT3G04380 97 / 2e-22 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT1G04050 91 / 9e-20 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT2G35160 84 / 1e-17 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT1G73100 83 / 2e-17 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G22740 81 / 1e-16 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G43990 81 / 2e-16 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT1G76710 79 / 5e-16 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT5G04940 76 / 9e-15 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003864 [exp] 493 / 1e-176 AT3G03750 340 / 2e-116 SET domain protein 20 (.1.2) Lus10005476 [exp] 98 / 2e-22 AT3G04380 503 / 3e-176 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10012513 [exp] 97 / 4e-22 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10016788 [exp] 97 / 6e-22 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10022483 [exp] 97 / 7e-22 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10022657 [exp] 94 / 2e-21 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10024946 [exp] 93 / 2e-20 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10011011 [exp] 91 / 1e-19 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10027956 [exp] 83 / 4e-19 AT3G04380 226 / 3e-73 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G064600 [exp] 285 / 1e-94 AT3G03750 258 / 1e-83 SET domain protein 20 (.1.2) Potri.013G048100 [exp] 101 / 2e-23 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.002G257400 [exp] 99 / 1e-22 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.005G129800 [exp] 99 / 2e-22 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.014G192500 [exp] 98 / 4e-22 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.007G033000 [exp] 98 / 4e-22 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.009G138600 [exp] 92 / 2e-20 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.005G195400 [exp] 91 / 3e-20 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.003G083100 [exp] 89 / 3e-19 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.006G027600 [exp] 86 / 4e-18 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10013623 pacid=23171627 polypeptide=Lus10013623 locus=Lus10013623.g ID=Lus10013623.BGIv1.0 annot-version=v1.0 ATGCCAAAAAGAGGGACAGAGAAGCACCAGAAGCAAAGCGACGGAGAAGAAGACCCAAATTCCACTCCGTTCATCAGCTGCGCGGAGCTCATCCTCACAT GGCTAACCCCGCAAGAACTCGCCGCCGCCGCCTCCACCTGCAAATACCTAGCACAGCTCACCCGCATCATCACTCTCCATCGATCCTCCGACGCTTCCAG AATGTTGGAGAAACTTCCCATTCCTTTCCACAGCTCCGCAGCCCAAGGCCGGCACTGTCCCCGATACGCCTATTTCCTCTACTCCACATCTCAGCTGCTG TCGTCGCAATCCCCCGATCGAAAGCCCTGGGGCTTCCCTAATTTCTATGCCGACTCGCCGGCGCTACATGCGACTGATAGCGGTTGCGGATGCGGTTGCG AAGGATGCGGAAGAGGCGATGGAAGTTTGGAATTGGAGGAGCTGGAATTAGGAGTGCTGAGCGAGTGTGGACCGAGTTGCGGGTGCGGGCTTGAATGCAG GAATCGGTTGACTCAAAGAGGGGTTAGGGTTAAACTAAAGATTGTTTGGGTTGAGAAGAAAGGCTGGGGTTTGTTCGCTGATCAGTTGATTCCACAATGC CAATTCATCTGCGAGTATACCGGAGAACTCTTGACAACCACCAAAGCAAGAGCACGGCAACAGGTGTACGACCAGCTCTCTTGTTCTTCCGCTCTTTTGG TAGTGAGAGAGCATCTGCCGTCGGGAAAGGCTTGTTTGAGGGTGAACATTGATGCGACCAAGATTGGGAATGTGGGTAGATTCATAAACCATTCTTGTGA TGGTGGTAACCTATGGACAGCAACAGTGAGGAGCCCTGGAGCTTACTTTCCTCGTCTCTGTTTCTTTGCTAGTAGAGACATTCAAGTTGGAGAAGAGCTC AGTTTTAGTTATGGAGAAACTAGGGTGAGGTCTACTGGTCTGCTGTGCTTCTGTGGTAGCTCTTCTTGCTCTGGAACTTTACCTTCAGAAGTGACTTAG
AA sequence Show only first row Show all	>Lus10013623 pacid=23171627 polypeptide=Lus10013623 locus=Lus10013623.g ID=Lus10013623.BGIv1.0 annot-version=v1.0 MPKRGTEKHQKQSDGEEDPNSTPFISCAELILTWLTPQELAAAASTCKYLAQLTRIITLHRSSDASRMLEKLPIPFHSSAAQGRHCPRYAYFLYSTSQLL SSQSPDRKPWGFPNFYADSPALHATDSGCGCGCEGCGRGDGSLELEELELGVLSECGPSCGCGLECRNRLTQRGVRVKLKIVWVEKKGWGLFADQLIPQC QFICEYTGELLTTTKARARQQVYDQLSCSSALLVVREHLPSGKACLRVNIDATKIGNVGRFINHSCDGGNLWTATVRSPGAYFPRLCFFASRDIQVGEEL SFSYGETRVRSTGLLCFCGSSSCSGTLPSEVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Lus10013623 [exp]	0	1
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	6.6	0.8585
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	10.7	0.8504
AT5G03970			F-box associated ubiquitinatio...		Lus10042547 [exp]	18.5	0.8425
AT2G39870			unknown protein		Lus10004675 [exp]	23.4	0.8349
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	24.6	0.8411
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	24.8	0.8394
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10008268 [exp]	25.0	0.8110
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	25.1	0.8371
AT1G75060			unknown protein		Lus10028777 [exp]	26.3	0.8313
AT3G51670			SEC14 cytosolic factor family ...		Lus10001269 [exp]	29.2	0.8262

Compare expression of checked genes

Lus10013623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.