Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28740 319 / 3e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G51110 47 / 4e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G41770 47 / 6e-06 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 46 / 1e-05 crooked neck protein, putative / cell cycle protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022346 [exp] 358 / 2e-121 AT5G28740 905 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041573 [exp] 352 / 9e-116 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034294 [exp] 50 / 9e-07 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10041477 [exp] 48 / 4e-06 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035600 [exp] 342 / 8e-112 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G043812 [exp] 176 / 7e-55 AT5G28740 236 / 2e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G094400 [exp] 52 / 1e-07 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.003G137200 [exp] 52 / 1e-07 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013624 pacid=23171570 polypeptide=Lus10013624 locus=Lus10013624.g ID=Lus10013624.BGIv1.0 annot-version=v1.0 ATGGAAATCAGACACAATAATTTCAAAGCTGCTTTGGAGCTTCTAAGGCAGACAACATCAGAGCCCTCAGTTGAGGTCAAACGAAGAGTAGCTGCTGCTG CTGGGAATGAAGAACCAGTCCAGGTGAACCCGCACAAGTCCTTGAGACTCTGGTCGCTCTATGTCCATCTGGAAGAAAGCCTAGGTACATTAGAGTCAAC TCGTGCTGTATATGAGCGAATATTGGACCTAAGAATTGCTACGCCACAAATCATAATCAACTACGCATGCCTTCTGGAGGATAATAAATGCTTTGAAGAT GCATTCAAGGTATATGAGGGAGGAGTCAAAATATTCAAGTACCCACATGCGAAAGAGATATGGCTGGAAGAGGATTATGGTTTTATGAAGCGAGCTATGA TGGTGTATGATCAAGCCACAAAGATGGTTCCGAGTAACGAGAAGTTGGGCATGTATGAAATCTACATAGCGCGCGCTGCTGAAATATTTGGTGCTTCGAG GACAAGAGAGATATATCAACAGGCGATAGAGTCTGGGATGCTCCTGGAAAGAGATGTTCAGAAAATGTGTCTCCGGTATGCAGAGCTAGAGAAGAAGTTG GGAGAAGTGGACCGAGCACGAGGAATTTATAGATATGCATCCCAGTTTGCAGATCAAGATTTCTGGAGTAGGTGGCGTGACTTTGAGGTTTTTCATTGCA TCATTCATCAGGGCTTACTTCCATCCGGCTGA
AA sequence Show only first row Show all	>Lus10013624 pacid=23171570 polypeptide=Lus10013624 locus=Lus10013624.g ID=Lus10013624.BGIv1.0 annot-version=v1.0 MEIRHNNFKAALELLRQTTSEPSVEVKRRVAAAAGNEEPVQVNPHKSLRLWSLYVHLEESLGTLESTRAVYERILDLRIATPQIIINYACLLEDNKCFED AFKVYEGGVKIFKYPHAKEIWLEEDYGFMKRAMMVYDQATKMVPSNEKLGMYEIYIARAAEIFGASRTREIYQQAIESGMLLERDVQKMCLRYAELEKKL GEVDRARGIYRYASQFADQDFWSRWRDFEVFHCIIHQGLLPSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10013624 [exp]	0	1

Compare expression of checked genes

Lus10013624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.