Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33110 343 / 8e-115 MATE efflux family protein (.1.2) AT1G33100 340 / 1e-113 MATE efflux family protein (.1) AT1G33090 333 / 9e-111 MATE efflux family protein (.1) AT1G33080 331 / 8e-110 MATE efflux family protein (.1.2) AT1G61890 268 / 1e-85 MATE efflux family protein (.1) AT1G11670 263 / 2e-83 MATE efflux family protein (.1) AT5G65380 262 / 2e-83 MATE efflux family protein (.1) AT5G44050 258 / 2e-81 MATE efflux family protein (.1) AT4G21910 251 / 8e-79 MATE efflux family protein (.1.2.3.4) AT3G21690 251 / 1e-78 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003869 [exp] 464 / 6e-162 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10020307 [exp] 278 / 7e-90 AT1G33110 554 / 0.0 MATE efflux family protein (.1.2) Lus10002645 [exp] 275 / 4e-88 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 274 / 1e-87 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 266 / 4e-85 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 268 / 1e-82 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 258 / 1e-81 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 255 / 8e-81 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10001142 [exp] 255 / 3e-80 AT3G21690 712 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G069700 [exp] 396 / 2e-135 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G102000 [exp] 276 / 3e-90 AT5G65380 437 / 7e-152 MATE efflux family protein (.1) Potri.007G010200 [exp] 271 / 1e-86 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 270 / 2e-86 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 266 / 8e-85 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.015G139400 [exp] 265 / 3e-84 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 265 / 3e-84 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 265 / 5e-84 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 264 / 6e-84 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002600 [exp] 264 / 1e-83 AT3G21690 610 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10013626 pacid=23171578 polypeptide=Lus10013626 locus=Lus10013626.g ID=Lus10013626.BGIv1.0 annot-version=v1.0 ATGGCTAGGAAGGAGGACTTAAACCAGAAGCTTTTGACCAAAACTTTGGATGCACAACAACAGGATCAAGAAGAAGAAGAATTACCCTTGGGGACCAAGC TATGGACGGAGGCCAAGAAGATGTGGGTTGTGGCTGCTCCCCCCACTTTTCCCCGATTCTCCACCTTTGGAATCAACGTCGTCAGTCAGGCCTTTATCGG ACACATAGGCTCAACTGAACTCGCTGCTTATTCACTCGTCTTCACTGTCCTCTTGAGGTTCGCCAACGGAGTCCTCCTGGGAATGGCTAGCGCTTTGGAA ACTCTGTGTGGGCAATCATTTGGTGCAAAACAGTTCCATATGCTGGGAGTGTACCTGCAGAGGTCTTGGATCGTTTTGATCCTGTGCGCCACTTTAATGT GTGGTTGTTGCCCTGAAACGTGGACAGGCTTTTCCTTTTTGGCCTTTAAGGATCTTTGGCCTGTTGTCAAGCTCTCTGTGTCTTCTGGTGCCATGCTTTG CCTTGAGCTCTGGTACAATACTGTGCTGGTTCTTCTGACAGGGAACATGAAGAATGCAGAGGTTGCTATTGATGCTCTTGCTATCTGCCTTAACATCAAT GGATGGGAGATGATGATCTCACTTGGTTTCTTGGCTGCAGCCAGTGTGAGGGTGTCAAATGAACTTGGGAGAGGGAACTCCAAAGGTGCCAAGTTTGCAA TTGTTATGACAGTTGCCACATCCTTCGTCATTGGTGTCATCCTATTTCTAGTTTTCCTATTCCTGAGAGGGAAAGTTGCTTACTTGTTCACCGAGAGCGC CCAAGTGGTGGATGCCGTCGCTGATCTTTCACCACTGCTTGCCTTCTCCATTCTCCTCAACAGCATACAACCAGTGCTTTCCGGTAGACCAAGCGTTGCT ATTGGAGCTGGATGGCAGAGCATTGTGGCGTACGTCAACATAGCCTGCTATTATCTTGTTGGGATCCCAGTTGGAGTTGTTCTTGGATATGTGTTCGACA TGCAAGTCAAAGGTGTCTGGATTGGAATGTTAATCGGTACATTCATTCAAACCATCATTCTTATGGTGATTACCTACAACACTGACTGGGACAAACAGGT TCTTCTTGCTCGTAATCGAGTTAACAGGTGGTATAAACCAGTAGCAGATTCTGAAGAGGGAAGCTAG
AA sequence Show only first row Show all	>Lus10013626 pacid=23171578 polypeptide=Lus10013626 locus=Lus10013626.g ID=Lus10013626.BGIv1.0 annot-version=v1.0 MARKEDLNQKLLTKTLDAQQQDQEEEELPLGTKLWTEAKKMWVVAAPPTFPRFSTFGINVVSQAFIGHIGSTELAAYSLVFTVLLRFANGVLLGMASALE TLCGQSFGAKQFHMLGVYLQRSWIVLILCATLMCGCCPETWTGFSFLAFKDLWPVVKLSVSSGAMLCLELWYNTVLVLLTGNMKNAEVAIDALAICLNIN GWEMMISLGFLAAASVRVSNELGRGNSKGAKFAIVMTVATSFVIGVILFLVFLFLRGKVAYLFTESAQVVDAVADLSPLLAFSILLNSIQPVLSGRPSVA IGAGWQSIVAYVNIACYYLVGIPVGVVLGYVFDMQVKGVWIGMLIGTFIQTIILMVITYNTDWDKQVLLARNRVNRWYKPVADSEEGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33110			MATE efflux family protein (.1...		Lus10013626 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	3.9	0.9273
AT5G20950			Glycosyl hydrolase family prot...		Lus10008432 [exp]	3.9	0.9020
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10012997 [exp]	6.0	0.9192
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	8.8	0.9268
AT2G18850			SET domain-containing protein ...		Lus10006953 [exp]	9.5	0.9120
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	12.2	0.9248
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	13.6	0.9135
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	17.5	0.9149
AT3G17300		EMB2786	unknown protein		Lus10017110 [exp]	18.4	0.9055
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10001681 [exp]	19.5	0.9163

Compare expression of checked genes

Lus10013626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.