Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45400 499 / 6e-177 exostosin family protein (.1) AT3G03650 436 / 7e-152 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT1G74680 376 / 6e-129 Exostosin family protein (.1) AT1G67410 263 / 3e-85 Exostosin family protein (.1) AT2G35100 220 / 3e-68 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 208 / 1e-63 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT1G34270 174 / 2e-50 Exostosin family protein (.1) AT5G16890 174 / 6e-50 Exostosin family protein (.1) AT5G33290 77 / 2e-15 XGD1 xylogalacturonan deficient 1 (.1) AT5G11130 74 / 3e-14 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003870 [exp] 636 / 0 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10005684 [exp] 571 / 0 AT3G45400 619 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 552 / 0 AT3G45400 622 / 0.0 exostosin family protein (.1) Lus10002060 [exp] 384 / 9e-132 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10024214 [exp] 378 / 5e-130 AT1G74680 468 / 3e-163 Exostosin family protein (.1) Lus10015791 [exp] 258 / 1e-82 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 255 / 1e-81 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10038355 [exp] 229 / 7e-72 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10036219 [exp] 232 / 2e-71 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G044600 [exp] 533 / 0 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.013G067400 [exp] 526 / 0 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.002G210000 [exp] 408 / 4e-141 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.008G034500 [exp] 261 / 2e-84 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.012G124600 [exp] 231 / 4e-72 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 224 / 3e-69 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.013G116200 [exp] 190 / 3e-56 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 185 / 1e-54 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 178 / 1e-51 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 146 / 4e-44 AT3G45400 145 / 5e-43 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10013627 pacid=23171571 polypeptide=Lus10013627 locus=Lus10013627.g ID=Lus10013627.BGIv1.0 annot-version=v1.0 ATGCGTATGGCTGGCGGTGCTGTTCGAGTTAGGAATTCCAGCAATGCTGATGTCGTATTCGTACCTTTCTTCTCGTCACTGAGCTTTAACCGGTTCTCGA AAGTGAATCCCCACCAGAAGAAGAGCAGGAACAATGTGTTGCAGGATAAGCTGGTCCAGTACTTGACATCACAGGAGGAATGGAAAAGGTCTGGCGGCAA AGATCATGTTGTCATGGCTCACCATCCTAATAGCATGTTGACTGCTAGGATGAAGCTGTGGCCTGCAATGTTCATACTCTCGGATTTCGGGAGGTATCCT CCGAATGTAGCTAATGTCGAGAAAGATGTGATTGCTCCTTACAAGCACATCGTTAAGAGCTATGTCAACGACTCATCTGAGTTTGATACTCGTCCCACTC TCCTCTACTTCCAAGGAGCCATTTACAGAAAAGATGGTGGACTGGCGAGGCAAGAGTTGTTTTATCTGCTGAAAGATGAAAAGGACGTACATTTCCAGTT CGGGAGCGTGAAGAACGATGGAATACACAAGGCTTCCATAGGGATGCATTCTTCGAAGTTCTGCCTAAACATAGCAGGGGACACGCCATCTTCGAACCGG CTCTTTGACGCCATAGTTAGCCATTGCGTTCCTGTGATAATCAGCGACGAGATTGAGCTCCCGTACGAGGATGTCCTGGACTACTCGGAGTTCTGCATAT TTGTCAAGACCTCTGATGCCATCAAGGAGAATTTCCTCATCAACTTCATCAGGAGCATCAACAAGGAAGAGTGGACAAGGATGTGGCAGAGGCTTAAGGA AGTGGAGCATCTTTTCCAGTTTCAGTACCCGTCGAGGGAAGGGGACGCTGTCCAAATGATATGGCAGGCAGTTGCCAGTAAGGTTCCAGGGATCAAGATG AAGATACACAAGTCTAGTAGATACTCTCGTTTTGTTTCTAACCAGAATGGAGGAGTTTCTAATAGAGTAATACGAACACCCAATAACTTTTGGTGA
AA sequence Show only first row Show all	>Lus10013627 pacid=23171571 polypeptide=Lus10013627 locus=Lus10013627.g ID=Lus10013627.BGIv1.0 annot-version=v1.0 MRMAGGAVRVRNSSNADVVFVPFFSSLSFNRFSKVNPHQKKSRNNVLQDKLVQYLTSQEEWKRSGGKDHVVMAHHPNSMLTARMKLWPAMFILSDFGRYP PNVANVEKDVIAPYKHIVKSYVNDSSEFDTRPTLLYFQGAIYRKDGGLARQELFYLLKDEKDVHFQFGSVKNDGIHKASIGMHSSKFCLNIAGDTPSSNR LFDAIVSHCVPVIISDEIELPYEDVLDYSEFCIFVKTSDAIKENFLINFIRSINKEEWTRMWQRLKEVEHLFQFQYPSREGDAVQMIWQAVASKVPGIKM KIHKSSRYSRFVSNQNGGVSNRVIRTPNNFW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45400			exostosin family protein (.1)		Lus10013627 [exp]	0	1
AT1G60770			Tetratricopeptide repeat (TPR)...		Lus10029115 [exp]	13.6	0.8237
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	59.3	0.8030
AT1G13690		ATE1	ATPase E1 (.1)		Lus10014565 [exp]	158.2	0.7583
AT5G41685			Mitochondrial outer membrane t...		Lus10040758 [exp]	183.0	0.7619
AT1G76860			Small nuclear ribonucleoprotei...		Lus10040487 [exp]	189.7	0.7593
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039305 [exp]	194.1	0.7573
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10017467 [exp]	216.6	0.7463

Compare expression of checked genes

Lus10013627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.