Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00160 338 / 2e-119 ATCG00160.1, RPS2 ribosomal protein S2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G139670 [exp] 351 / 3e-124 ATCG00160 399 / 6e-143 ribosomal protein S2 (.1) Potri.019G028700 [exp] 348 / 1e-123 ATCG00160 343 / 2e-121 ribosomal protein S2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0067 [flax] [poplar] SIS PF00318 [flax] [poplar] Ribosomal_S2 Ribosomal protein S2
Representative CDS sequence Show only first row Show all	>Lus10013628 pacid=23171610 polypeptide=Lus10013628 locus=Lus10013628.g ID=Lus10013628.BGIv1.0 annot-version=v1.0 ATGGCGCCTTATATCTCTGCCGAGCATAAAGGTAGGCATATTATAAATCTTATTAGAACCGCCCGTTTCTTATCTGAAGCTTGTGATTTAGTTTTTGATG CAGCAAGTAGGAGAAAACAATTTTTAATTGTTGGGACCAAAAAAAAAGCAGCCGCTTCAGTAGCCCGGGCTGCAATAAAGGCTCGGTGTCATTATGTTAA TAAAAAATGGCTCGGTGGTATTTTAACGAATTGGTCCACTACAGAAACGAGACTTCAAAAGTTCAGGGATTTGAGGATGGAACAAAGGACGGGGAGACTC AACCGCCTTCCGAAAGGCGAGGCGGCTCGATTGAAGAGACAATTGTCGCACTTGCAAAGATATCTGGGCGGGATTAAATATATGACGGGATTACCCGATA TTGTGATAATCCTTGATCAACAAGAGGAATATACAGCTCTTCGAGAATGTATCACTTTAGGAATTCCAACGATTTGTTTAATTGATACAAACTGTGACCC CGATCTATCAGATATTTCGATTCCAGCGAATGATGACGCTATAGCTTCAATTCGACTAATTCTTAACAAATTAGTATTTGCAATTTGTGAGGGTCATTCT AGCTATATACAAAATTCCTGA
AA sequence Show only first row Show all	>Lus10013628 pacid=23171610 polypeptide=Lus10013628 locus=Lus10013628.g ID=Lus10013628.BGIv1.0 annot-version=v1.0 MAPYISAEHKGRHIINLIRTARFLSEACDLVFDAASRRKQFLIVGTKKKAAASVARAAIKARCHYVNKKWLGGILTNWSTTETRLQKFRDLRMEQRTGRL NRLPKGEAARLKRQLSHLQRYLGGIKYMTGLPDIVIILDQQEEYTALRECITLGIPTICLIDTNCDPDLSDISIPANDDAIASIRLILNKLVFAICEGHS SYIQNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	0	1
ATCG00830		ATCG00830.1, RP...	ribosomal protein L2 (.1)		Lus10001687 [exp]	1.4	0.9757
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	2.0	0.9656
ATCG00500		ATCG00500.1, AC...	acetyl-CoA carboxylase carboxy...		Lus10002473 [exp]	3.9	0.9307
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032826 [exp]	5.3	0.9157
ATCG00670		PCLPP, ATCG0067...	CASEINOLYTIC PROTEASE P 1, pla...		Lus10006595 [exp]	5.5	0.9116
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10006411 [exp]	5.7	0.8692
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10009173 [exp]	7.3	0.9005
ATCG00120		ATCG00120.1, AT...	ATP synthase subunit alpha (.1...		Lus10004894 [exp]	7.5	0.9000
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032827 [exp]	8.5	0.8972
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10004897 [exp]	11.2	0.8967

Compare expression of checked genes

Lus10013628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.