Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17780 365 / 1e-123 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G17720 334 / 5e-111 alpha/beta-Hydrolases superfamily protein (.1) AT1G64670 304 / 6e-99 CED1, BDG1 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1, BODYGUARD1, alpha/beta-Hydrolases superfamily protein (.1) AT5G41900 303 / 2e-98 alpha/beta-Hydrolases superfamily protein (.1) AT4G24140 290 / 3e-93 BDG3 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 46 / 4e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G36530 44 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 43 / 0.0003 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003871 [exp] 742 / 0 AT5G17780 429 / 2e-148 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008266 [exp] 322 / 2e-105 AT4G24140 582 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10033234 [exp] 320 / 5e-105 AT4G24140 587 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10031137 [exp] 47 / 3e-05 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10025172 [exp] 46 / 6e-05 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10003969 [exp] 45 / 7e-05 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028315 [exp] 42 / 0.0006 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G147400 [exp] 310 / 9e-101 AT4G24140 615 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G083400 [exp] 298 / 4e-96 AT4G24140 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G219700 [exp] 50 / 2e-06 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 47 / 1e-05 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G121000 [exp] 47 / 2e-05 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10013629 pacid=23171589 polypeptide=Lus10013629 locus=Lus10013629.g ID=Lus10013629.BGIv1.0 annot-version=v1.0 ATGTCTCCAGGGAGCAATGCGTCGGCTACAATAGGGAAATGGGCAATATCCCTGACTAGAGCTCTCCACTATGCCCTCACTGTCGTCGTCTTCCTGCTAC TGGATCTTCTGGACGCCCTCTTGTGCGTAATTTACAGGTTTATAGATGAGTATCTTGAAGGGGAGACAACGAAGCCGTGCTATTGTGGGGAGCGAGTTGG AGATGGCTCAATTGAGTTGTCAGGGACGCTGCACGGTAGAAGGAATGTGTTTAGGGAAATGGGTTGTCGTTTCCCCAGCAAAAGATTCAAGCTTCAGCAG CAAGAATCCCACAAGTCCAACGACGGCGGCTGCCAAACCAGCAGAAAAAGTGTGAACAATAGTAGTGGTAGATGGTCGGATTGTGGATGCGCGTCGTGTG TTTCTTGGACAGAGGATGGCGGCGGCCAGAAACTCTACGTTTTGGTGAGGGAGCCATCCTCCTCAGCTACTGGGAATGAAGATGCAATTGAGAATGTGAT ATTCGTACATGGGTTCATTTCATCTTCATCATATTGGAGTGAATCCGTATTTCCAAATCTCTCGGAACCCGGAAAGCGGACCTACAGACTGTTTGCCGCT GACCTTTTGGGGTTCGGACAGAGTCCCAAGCCAATGGATTGTTTATACACTCTGCAAGATCACTTGGAGAAGATTGAGGACTCGGTTGTGAAGCCATTTC AGCTCAAGTCTTTCCACATCGTTGCCCATTCCATGGGATGCATCATAGCATTGGCCCTCGCGGCTAAGTACTCCCAAACTGTGAAATCCATTACCCTCGT AGCACCACCGTACTTGGCGAGTTCAAAAGACGAGGAGCCGAGTTCAAGAGCGCTTGAGAAGATTGCCAAGAAGAGACTGTGGCCACCGCTCATGTTTGGG GCGGCATTGATGGCATGGTACGAGCACTTGGGACGATGCGTTTGCTTTGTGGTTTGCAGGCACCATAGAGTGTGGGAGAAGCTGGTGATGCTACTTACAC GAAGCAGGGAAGTACATTACATGGTGAGGGACTTGATGAGGCACACCCATCATTCGGCCTGGCATACGGTGCACAATGTGATATGCGGGGGAGCGAGGCG CATGGATGATTTTGTAGAAACTGTGATGAGATCTGGTATGACGGTATGTGTGGTTCACGGAGATAAGGACCCTGTTGTTCCATTGGAATGTACCGTAAAG CTGAAGAGGAAGTTTTGGGATAATAATAAGCAGATGAGATTGGAAGTTGTGTGGAATGGCGACCATACCTCTGTGATTACTGGGAGGGAAAAGGAGTTCA CTCGAAGATTAGAGCACATATGGGAGGAGTCATCTTCCTCTTCTCATTCTATTTAG
AA sequence Show only first row Show all	>Lus10013629 pacid=23171589 polypeptide=Lus10013629 locus=Lus10013629.g ID=Lus10013629.BGIv1.0 annot-version=v1.0 MSPGSNASATIGKWAISLTRALHYALTVVVFLLLDLLDALLCVIYRFIDEYLEGETTKPCYCGERVGDGSIELSGTLHGRRNVFREMGCRFPSKRFKLQQ QESHKSNDGGCQTSRKSVNNSSGRWSDCGCASCVSWTEDGGGQKLYVLVREPSSSATGNEDAIENVIFVHGFISSSSYWSESVFPNLSEPGKRTYRLFAA DLLGFGQSPKPMDCLYTLQDHLEKIEDSVVKPFQLKSFHIVAHSMGCIIALALAAKYSQTVKSITLVAPPYLASSKDEEPSSRALEKIAKKRLWPPLMFG AALMAWYEHLGRCVCFVVCRHHRVWEKLVMLLTRSREVHYMVRDLMRHTHHSAWHTVHNVICGGARRMDDFVETVMRSGMTVCVVHGDKDPVVPLECTVK LKRKFWDNNKQMRLEVVWNGDHTSVITGREKEFTRRLEHIWEESSSSSHSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10013629 [exp]	0	1
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Lus10034214 [exp]	2.8	0.8951
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10000867 [exp]	4.0	0.9064
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10025673 [exp]	5.7	0.8683
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10035042 [exp]	8.6	0.8990
AT2G34460			NAD(P)-binding Rossmann-fold s...		Lus10004936 [exp]	10.9	0.8331
AT1G74470			Pyridine nucleotide-disulphide...		Lus10021665 [exp]	11.0	0.8960
AT1G22850			SNARE associated Golgi protein...		Lus10006162 [exp]	12.3	0.8778
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10017401 [exp]	13.2	0.8920
AT1G22750			unknown protein		Lus10028718 [exp]	14.8	0.8704
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	15.0	0.8784

Compare expression of checked genes

Lus10013629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.