Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17820 322 / 8e-110 Peroxidase superfamily protein (.1) AT4G26010 314 / 1e-106 Peroxidase superfamily protein (.1) AT1G34510 291 / 2e-97 Peroxidase superfamily protein (.1) AT3G03670 290 / 4e-97 Peroxidase superfamily protein (.1) AT5G22410 241 / 6e-78 RHS18 root hair specific 18 (.1) AT5G42180 238 / 8e-77 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT4G11290 235 / 1e-75 Peroxidase superfamily protein (.1) AT5G06720 231 / 5e-74 ATPA2 peroxidase 2 (.1) AT5G51890 231 / 6e-74 Peroxidase superfamily protein (.1) AT5G64120 227 / 2e-72 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001324 [exp] 612 / 0 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10005679 [exp] 436 / 2e-154 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10020312 [exp] 422 / 3e-142 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10005681 [exp] 340 / 3e-116 AT5G17820 294 / 9e-99 Peroxidase superfamily protein (.1) Lus10018375 [exp] 269 / 8e-89 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10004859 [exp] 261 / 8e-86 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10032511 [exp] 253 / 1e-82 AT5G22410 302 / 8e-102 root hair specific 18 (.1) Lus10031664 [exp] 251 / 8e-82 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10005614 [exp] 250 / 2e-81 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G066800 [exp] 347 / 7e-119 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.015G110200 [exp] 265 / 2e-87 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.005G108900 [exp] 261 / 5e-86 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 253 / 1e-82 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.002G018000 [exp] 245 / 2e-79 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 244 / 5e-79 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 243 / 1e-78 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 240 / 1e-77 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 240 / 1e-77 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 237 / 2e-76 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10013631 pacid=23171567 polypeptide=Lus10013631 locus=Lus10013631.g ID=Lus10013631.BGIv1.0 annot-version=v1.0 ATGGTTGCTAATAAGATGTCTGTGCTTATTGTGGGTTATGTCTTCTTTCTCTGCAACGCTGTTGTGGTATCATCTGCAGGCGCAGACGGTTTAAAAGTGG GGTTTTACAGATCGACCTGCCCAGAAGCTGAAACCATTGTACGGAGGGTTGTTCACAAGTGGTTCAACAATGATAGATCCATCCCAGCTGCTCTGCTTCA CTTGCAATTTCATGACTGTTTCGTCAACGGATGTGACGCGTCGATACTGATAGATTCAACGGCCCAAAATCCATCTGAAAAAGCCGCGGGGCCCAGCCAA ACAGTCCGAGGCTACGACCTCCTCGACGCCGTCAAGGCTGAGCTGGAAGCCGCATGTCCGTCACGAGTTTCCTGTGCCGACATCGTCGCACTCGCCACCA GAGACGCATTGGTCCTCGCCGGCGGGCCGACCTACGCCCTCCCGACAGGAAGGCTGGACGGCGTCGTCTCCAAACCCAGTGACGTCAAACTCCCCGGCCC CACACTTAACATCTCCGAAGCCTTCACTCAGTTCTTCCAACCGCTCGGCTTCACCCTCGCGGAAATGGTCACCCTCCTCGGGGCCCACACTGTAGGGGTG GCCCACTGCTCCTTGTTTCGCGATCGGATCTCCGATTTCAAAGGAACCGGGCGGCCTGACCCGTCCATGGACCCGAACTTGGTGGTCAGCCTACGCAAGA CCTGCTCCACTACTGGAAGTAATAAAAATAATAGCACTAATCCCACAGCGTTTTTGGATCAGAATACATCGTTTGCTGTCGATAATTCCTACTACAGGGA GTTGAGAAGCAAGAAGGGAGTGCTGTCTTTTGATCAGGCGTTGGAAACCGATGGTTCGACGACCGGAATAGTGTCGAGGTTCGCGAGGAGCGAGGTGGAG TTCAGAAAGAGCTTTGCGGCGGCGATGGTGAAGATGGGGAACATTGTTGGTGGTGGCGACGGTGAGATCAGGAAGAATTGTAGAGTGTTTAATTAA
AA sequence Show only first row Show all	>Lus10013631 pacid=23171567 polypeptide=Lus10013631 locus=Lus10013631.g ID=Lus10013631.BGIv1.0 annot-version=v1.0 MVANKMSVLIVGYVFFLCNAVVVSSAGADGLKVGFYRSTCPEAETIVRRVVHKWFNNDRSIPAALLHLQFHDCFVNGCDASILIDSTAQNPSEKAAGPSQ TVRGYDLLDAVKAELEAACPSRVSCADIVALATRDALVLAGGPTYALPTGRLDGVVSKPSDVKLPGPTLNISEAFTQFFQPLGFTLAEMVTLLGAHTVGV AHCSLFRDRISDFKGTGRPDPSMDPNLVVSLRKTCSTTGSNKNNSTNPTAFLDQNTSFAVDNSYYRELRSKKGVLSFDQALETDGSTTGIVSRFARSEVE FRKSFAAAMVKMGNIVGGGDGEIRKNCRVFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17820			Peroxidase superfamily protein...		Lus10013631 [exp]	0	1
AT1G07795			unknown protein		Lus10040852 [exp]	2.0	0.9568
AT3G52790			peptidoglycan-binding LysM dom...		Lus10027407 [exp]	2.2	0.9700
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019029 [exp]	3.2	0.9606
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10028888 [exp]	5.3	0.9490
AT1G08170			Histone superfamily protein (....		Lus10041351 [exp]	9.5	0.9459
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029638 [exp]	10.0	0.9529
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	10.4	0.9603
AT5G24620			Pathogenesis-related thaumatin...		Lus10023896 [exp]	12.0	0.9369
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10009872 [exp]	13.0	0.9354
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10013030 [exp]	15.8	0.9223

Compare expression of checked genes

Lus10013631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.