Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17840 108 / 6e-30 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001328 [exp] 262 / 1e-89 AT5G17840 143 / 3e-44 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10001325 [exp] 96 / 6e-26 ND 34 / 0.001 Lus10031340 [exp] 48 / 1e-07 ND 34 / 0.002 Lus10005676 [exp] 40 / 0.001 AT3G03690 454 / 3e-158 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040400 [exp] 143 / 5e-43 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.013G066000 [exp] 140 / 8e-42 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.013G066600 [exp] 54 / 2e-09 AT3G47510 40 / 2e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013632 pacid=23171576 polypeptide=Lus10013632 locus=Lus10013632.g ID=Lus10013632.BGIv1.0 annot-version=v1.0 ATGGAATCTACAGCCATAATCAGCTCTCACTTAACTTTTCCAGTCGGCCCTTCGCCAATTTGCGATAGAACTTCCAAACGCACGGTTTGTTTTAGTTATG AGCTCCGATCGTGCCGGGGAGGATTCGCTACAAACAAAATCTCGGCCCTTCTTCCTAATGGCTCTGTTTCTTCCTCTACTTCTCTCGGCTCAGATTCGAG GTCGGTGACGAATGCGCATAAGCGCAGAAGCAGCTTGGAGTCTCTCTTCTGCTACGACAAGCCGATACCGGAAGAGATCATAGCTACGCCAGTTGGTGTA TCTTCATTAGCGGAGAAGGCAATCGGAGAGAATCTCAGATGTGCTGACTGCGAAGCCAAAGGTGCAGTCCGATGTACCACCTGCTCCGGCTCTGGCCTCT ACGTCGACTCCGTTATGGAGAGCCAAGGGATCATTGTTAAAGTCCGCTGCCTTGGAAGCCGCATCATCATCATGGATATTAGTTTGAACAAAGGAAACCC ATCTTCATCATTTTCTTCCTCGCCAACGGAAGTCCATCGTCCTAAGGAGCAGGATGAAGAAATTGGGGAATATACGATGAGTTTCGGAAGAAGGATGGAG ATGGAGGAGAGCACAGATTACCCAGGGACTGGTGCAAATAATCACCATGATCCTAAAACACCTGGAAGACCATTTTGA
AA sequence Show only first row Show all	>Lus10013632 pacid=23171576 polypeptide=Lus10013632 locus=Lus10013632.g ID=Lus10013632.BGIv1.0 annot-version=v1.0 MESTAIISSHLTFPVGPSPICDRTSKRTVCFSYELRSCRGGFATNKISALLPNGSVSSSTSLGSDSRSVTNAHKRRSSLESLFCYDKPIPEEIIATPVGV SSLAEKAIGENLRCADCEAKGAVRCTTCSGSGLYVDSVMESQGIIVKVRCLGSRIIIMDISLNKGNPSSSFSSSPTEVHRPKEQDEEIGEYTMSFGRRME MEESTDYPGTGANNHHDPKTPGRPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Lus10013632 [exp]	0	1
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	4.9	0.9586
AT3G19990			unknown protein		Lus10038848 [exp]	6.7	0.9397
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	8.9	0.9556
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039640 [exp]	9.0	0.9136
AT5G03890			unknown protein		Lus10015117 [exp]	10.2	0.9435
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017980 [exp]	12.6	0.9418
AT1G70840		MLP31	MLP-like protein 31 (.1)		Lus10020497 [exp]	14.1	0.9452
AT5G61820			unknown protein		Lus10017315 [exp]	15.7	0.9444
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	15.8	0.9499
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	17.0	0.9436

Compare expression of checked genes

Lus10013632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.