Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09670 473 / 7e-168 Oxidoreductase family protein (.1) AT1G34200 396 / 8e-138 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1) AT1G66130 265 / 2e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001327 [exp] 697 / 0 AT4G09670 484 / 1e-172 Oxidoreductase family protein (.1) Lus10005674 [exp] 468 / 4e-166 AT4G09670 437 / 9e-154 Oxidoreductase family protein (.1) Lus10002180 [exp] 229 / 2e-73 AT1G66130 239 / 3e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039898 [exp] 185 / 1e-56 AT1G66130 212 / 1e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10007490 [exp] 42 / 0.0005 AT4G17370 590 / 0.0 Oxidoreductase family protein (.1) Lus10020317 [exp] 0 / 1 AT4G09670 69 / 2e-24 Oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200200 [exp] 528 / 0 AT4G09670 521 / 0.0 Oxidoreductase family protein (.1) Potri.005G200300 [exp] 525 / 0 AT4G09670 522 / 0.0 Oxidoreductase family protein (.1) Potri.017G137300 [exp] 351 / 6e-120 AT1G66130 382 / 2e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01408 [flax] [poplar] GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold
Representative CDS sequence Show only first row Show all	>Lus10013633 pacid=23171579 polypeptide=Lus10013633 locus=Lus10013633.g ID=Lus10013633.BGIv1.0 annot-version=v1.0 ATGTCGTCGGAACCAACCATCTCTTTCGGAATCCTCGGATGCGCCGACATAGCACGCAAGGTGTCACGGGCAATCACTCTGTCCCCCAGCGCCCGCATAG CCGCCATCGCAAGCCGGACACTGGACAAGGCCACAGCATTCGCCAAGGCCAATCACTTCCCTCCCGACGTCAAGACCTACGGTTCCTACGAAGCTCTGCT CGACGACCCCGAAATCGACGTCGTTTATCTTCCGTTGCCCACTTCCCTCCACCTGAAATGGGCTACCCTTGCTGCCCACAAGAAGAAGCATATCCTTCTC GAGAAACCCGTCGCCGTCAACGTGGACGAGCTTGACCAGATTTTGGCCGCCTGCGACGCTAACGGCGTTCAGTTCATGGACGGCACCATGTGGGTCCATC ATCCCAGGTCTGCTAAGATGCTCGAGTTCTTGAATGACAAACAACGGTTTGGGGATCTCAGAACGATACACAGCTGTTTTACCTTTGCGGCTGGTGAGTC ATTCCTGAAAGACAACATAAGAGTAAAGCCAGACCTCGACTCTCTTGGCGCCCTAGGGGATGCTGGGTGGTATGGAGTCAGAGCTATCCTCTTTGCAGCT AACTATGAGCTTCCAAGGAGGGTAGTAGCCACCCGAGGTGCAGTCCTGAGCGACAAAGGCGTACTTTTAGCGTGTGGAGGCTCTCTGCATTGGGAAGATG GGAAAGTAGCAAACTTTCACTGCTCTTTCTTGACCCACATGACCATGTTTGTGACAGCAATTGGTACTTCAGGAACCTTGCAGCTGAACGATTTCATCAT CCCTTTTGAAGAAAAAGAGGCTTCCTTTACTACCTCTTCACAGGCAAGGTTCAACGATCAAGTGTCCGGATGGGAACCTGCTCCAACCCAGCACGTCGTG TCCGTTGATATGCCGCAGGAGGTTTGCATGATCAACGAGTTTTCGCGTTTGGTTACGAACATTAAGGAAAATGGCGCGACGCCTGATCTGTCTTGGCCGT CTCGCAGCAGGAAGACGCAGCAGATCTTGAATGCCGTGAAAGAGTCAATTGAGGAAGGGTTTGAACCTGTTGAGATAGCCTAG
AA sequence Show only first row Show all	>Lus10013633 pacid=23171579 polypeptide=Lus10013633 locus=Lus10013633.g ID=Lus10013633.BGIv1.0 annot-version=v1.0 MSSEPTISFGILGCADIARKVSRAITLSPSARIAAIASRTLDKATAFAKANHFPPDVKTYGSYEALLDDPEIDVVYLPLPTSLHLKWATLAAHKKKHILL EKPVAVNVDELDQILAACDANGVQFMDGTMWVHHPRSAKMLEFLNDKQRFGDLRTIHSCFTFAAGESFLKDNIRVKPDLDSLGALGDAGWYGVRAILFAA NYELPRRVVATRGAVLSDKGVLLACGGSLHWEDGKVANFHCSFLTHMTMFVTAIGTSGTLQLNDFIIPFEEKEASFTTSSQARFNDQVSGWEPAPTQHVV SVDMPQEVCMINEFSRLVTNIKENGATPDLSWPSRSRKTQQILNAVKESIEEGFEPVEIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09670			Oxidoreductase family protein ...		Lus10013633 [exp]	0	1
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	1.0	0.9149
AT2G45260			Plant protein of unknown funct...		Lus10030291 [exp]	2.4	0.9052
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10025796 [exp]	4.2	0.8985
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	5.1	0.9106
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	5.5	0.9000
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10013415 [exp]	6.0	0.8811
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	6.0	0.8866
AT1G05780			Vacuolar ATPase assembly integ...		Lus10033833 [exp]	7.0	0.8888
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10029221 [exp]	7.4	0.8861
AT1G11770			FAD-binding Berberine family p...		Lus10038440 [exp]	7.7	0.8508

Compare expression of checked genes

Lus10013633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.