Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17850 448 / 4e-152 Sodium/calcium exchanger family protein (.1) AT5G17860 392 / 3e-130 CAX7 calcium exchanger 7 (.1) AT3G14070 347 / 1e-111 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT1G54115 221 / 4e-64 ATCCX4 cation calcium exchanger 4 (.1) AT1G08960 155 / 9e-41 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001329 [exp] 881 / 0 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10020318 [exp] 372 / 2e-121 AT5G17850 464 / 2e-157 Sodium/calcium exchanger family protein (.1) Lus10005673 [exp] 364 / 1e-120 AT5G17850 346 / 7e-114 Sodium/calcium exchanger family protein (.1) Lus10001330 [exp] 360 / 2e-117 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10013635 [exp] 356 / 4e-116 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10015668 [exp] 214 / 7e-64 AT1G54115 484 / 8e-168 cation calcium exchanger 4 (.1) Lus10037681 [exp] 213 / 7e-61 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10037682 [exp] 215 / 1e-59 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10029938 [exp] 149 / 7e-38 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065900 [exp] 553 / 0 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.019G040301 [exp] 468 / 8e-161 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.013G065800 [exp] 362 / 4e-118 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 335 / 8e-108 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.003G066900 [exp] 200 / 3e-56 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 189 / 2e-52 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.013G025100 [exp] 169 / 8e-46 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10013634 pacid=23171581 polypeptide=Lus10013634 locus=Lus10013634.g ID=Lus10013634.BGIv1.0 annot-version=v1.0 ATGGGGGCCAGCAAATATTCCTTGTCTTCGTCCCAACGGAAAGGATGTCTGCTATTCCTCAACGCTTCCTTTCTAATAACAACCACCATTTTCCTCACCA TTGATCACTCCCATCACCCTCCAACATCCATCGCTCTCGACTCTTTCAAAAAAAACCCCTCCTCCGCCGATGTCCTCGACTGCCACGCTTTCCAAGATCT CCCCGACGCAGAAGCCAAGTGCCGTTCCCTCAATTCCAGAAACCCTTGCGTCTCTCAAGGCTACATCGATTACCTCCGCCTATTCTACTGCAATTTCGCT CAACAATCTCCCTTCGCAGGTCATATCCTCCTCCTTCTCTGGCTCCTCGTCCTCTTCTATCTGCTGGGGAACACCGCCTCCGACTACTTCTGCTCTTCGC TCGAGGATTTATCCAGGCTGCTGAAACTGTCCCCGACGATCGCCGGCGTCACTCTGCTGTCGCTAGGGAACGGAGCTCCTGATGTGTTCGCCAGCATAGT CTCCTTTGCCGGGAGTGGGACGCGGGACATTGGGTTCAACACCATGGTAGGTGGGGCTTCTTTCGTTACCTGTGTTGTGGTTGGAACCATAAGCTTTCTA GTTAAGCACAGGAGGGTTAGGGTTAGCCAAGCAGCCTTCGTCAGGGACGTTTGTTTCTTTCTGTTGGTTCTTGGTTCGTTGGTTATGACCATACTGCTGG GGAAAGTTAATCTCTGGGGCGCAATTGGGTACTTGATGATGTATGTCGCTTATGTGATTGTTGTCTACATTTGGACGAATGGTGGTGGTGATGTTAATAG TCCTAGTTCAAGCTGCGAGAGTGGATTGAGCATACCCATACTGATGAACAAGGAGGAAGATGGTGAATTGGATCAGTGGAGGAATTTCAATGCCAGGAGA TCTGATCCTTGTAGTTTGATGATTTACGTAGCTGAGATGCCACTCTACTTGCCTCGAAGACTGACCATCCCTGTCGTTTCGGAAAAAGACTGGTCGAAGC CAATGGCGATCGCATCGGTCGTACTGGCACCAACTCTTCTGTCAACTCTATGGATTGCTCAATATGACAGTCCCAGTATCAAAACCTTGGTCATAGTTCA TGGAATTGGGTGTCTGGTTGGAGCAATACTAGGCATAGTTGCATATCTTACAACAGAGGAACTAACCCCTCCGGGCAAGAAATGGTTGCTTCCTTGGCTG GGAGGTGGGTTTCTGATGAGTGTGACATGGAGTTACATAACAGCTCAGGAATTGGTAGCGTTGTTAGTTTCAATGGGGTACATATTTGGGATAAGCCCTT CAATACTGGGTCTAACGGTGCTTGCATGGGGTAACTCGCTGTCGGATCTCATAACCAATTCGACAATGGCAATCAACGGCGGTCCTGAAGGTGTGCAAGT AGCCATATCAGGGTGTTATGCCGGACCGGTGTTCAACATTCTGTTTGGACTGGGATTGTCGCTGGTTGGTTCTTGTTGGGAATCGTATCCGGATCCCATT TCGATATCCTCGGACCCGTATCTTCTGGAGACGCTGGGGTTCTTGTTTGCAGGGTTGATGTGGGCGTTGGTTGTATTGCCCAGAAGAAGAATGAAGGTTG ATGGTGTACTGGGAGCAGGTCTCTTGCTTATTTATCTAATGTCTGTGTCTTTGAGGGTTATTCAGACTTCAGGGTCCCTTCAATTTTATCCCAACAACTT GTAA
AA sequence Show only first row Show all	>Lus10013634 pacid=23171581 polypeptide=Lus10013634 locus=Lus10013634.g ID=Lus10013634.BGIv1.0 annot-version=v1.0 MGASKYSLSSSQRKGCLLFLNASFLITTTIFLTIDHSHHPPTSIALDSFKKNPSSADVLDCHAFQDLPDAEAKCRSLNSRNPCVSQGYIDYLRLFYCNFA QQSPFAGHILLLLWLLVLFYLLGNTASDYFCSSLEDLSRLLKLSPTIAGVTLLSLGNGAPDVFASIVSFAGSGTRDIGFNTMVGGASFVTCVVVGTISFL VKHRRVRVSQAAFVRDVCFFLLVLGSLVMTILLGKVNLWGAIGYLMMYVAYVIVVYIWTNGGGDVNSPSSSCESGLSIPILMNKEEDGELDQWRNFNARR SDPCSLMIYVAEMPLYLPRRLTIPVVSEKDWSKPMAIASVVLAPTLLSTLWIAQYDSPSIKTLVIVHGIGCLVGAILGIVAYLTTEELTPPGKKWLLPWL GGGFLMSVTWSYITAQELVALLVSMGYIFGISPSILGLTVLAWGNSLSDLITNSTMAINGGPEGVQVAISGCYAGPVFNILFGLGLSLVGSCWESYPDPI SISSDPYLLETLGFLFAGLMWALVVLPRRRMKVDGVLGAGLLLIYLMSVSLRVIQTSGSLQFYPNNL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17850			Sodium/calcium exchanger famil...		Lus10013634 [exp]	0	1
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007655 [exp]	2.8	0.9043
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	3.2	0.9060
AT1G14630			unknown protein		Lus10039139 [exp]	6.0	0.8794
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	6.7	0.8872
AT1G49230			RING/U-box superfamily protein...		Lus10005817 [exp]	7.2	0.8411
AT3G25130			unknown protein		Lus10025905 [exp]	7.3	0.8514
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	8.1	0.8779
AT3G61920			unknown protein		Lus10002686 [exp]	9.4	0.8338
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10023561 [exp]	12.8	0.8275
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	15.6	0.8471

Compare expression of checked genes

Lus10013634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.