Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17860 454 / 1e-154 CAX7 calcium exchanger 7 (.1) AT1G54115 382 / 2e-125 ATCCX4 cation calcium exchanger 4 (.1) AT5G17850 375 / 6e-124 Sodium/calcium exchanger family protein (.1) AT3G14070 375 / 1e-122 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT1G08960 173 / 3e-47 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001330 [exp] 833 / 0 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10013634 [exp] 385 / 1e-127 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10001329 [exp] 375 / 3e-123 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10037681 [exp] 353 / 3e-114 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10037682 [exp] 351 / 3e-106 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10015668 [exp] 280 / 4e-89 AT1G54115 484 / 8e-168 cation calcium exchanger 4 (.1) Lus10020318 [exp] 272 / 2e-83 AT5G17850 464 / 2e-157 Sodium/calcium exchanger family protein (.1) Lus10005673 [exp] 263 / 2e-81 AT5G17850 346 / 7e-114 Sodium/calcium exchanger family protein (.1) Lus10029938 [exp] 162 / 2e-42 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065800 [exp] 538 / 0 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 513 / 4e-177 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.013G065900 [exp] 422 / 7e-142 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.019G040301 [exp] 345 / 1e-112 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.003G066900 [exp] 349 / 2e-112 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 327 / 4e-104 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.013G025100 [exp] 167 / 4e-45 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10013635 pacid=23171613 polypeptide=Lus10013635 locus=Lus10013635.g ID=Lus10013635.BGIv1.0 annot-version=v1.0 ATGGAAAATTCCTGTTCCATTTTCCACTGCAAGAAGAAGATCATTCTCTTCCTCCTCAACATTTCCTTCATTCTTCTCCTCACATTCTTCCTTGCAACTT CAAATCTTCTCCCCCCTTCCGAACTCGAACATAAACTTTGGGGAATAACCAATGGCACTACCTGCAGTGAACTTCACAACTACACAGATTGCAAGTCCAA GTGCCTCTATGTCAAATCTCATTGCAGCTCCAAAGGATACATAAACTATCTCCAAATATACTACTGCACTTTGGGCCATTCCCCACCACTTGCCTACGCT ACCTTACTCCTATGGCTCTCCATTCTCTTCTACCTATTGGGTAACACAGCTGGAGAATACTTCTGTTCTTCCCTGGAGAGCTTGTCTACTCTCCTGAAAC TCTCTCCAACCATTGCCGGGGTCACACTTCTCTCCCTAGGCAACGGAGCCCCCGATGTTTTCTCCAGCATCGTCTCCTTCACAAGATCCAACAACGGTGA TGTCGGCCTCAACAGTGTCCTGGGAGGTGCATTTGTCGTGTCGAATGTTGTGGTCGGTATCATTAGCATTTTAATCACTAGTAGTCATGAAGTTTCAATT GACAAGCCTAGCTTCATTCGAGACGTTTCCTTCTTCCTTTTCTCCCTTGTTTCGCTACTACTGATTCTTCTAGTAGGAGAAATCACGCTGTGGGGTGCCT TGCTTTTCCTTTCTATATACTTTCTCTATGTCTCTGTAGTTTGTTTCATGCATTACTTGCACGGCAAGAAACATAACCACAATGTGAGCCAGCTGCCAAT GGGAATCCCACTTCTAGGCTATATTAATGACAGTGACATCCCGACATTTTCGACAAAGGCTAGCATCCAGAGCAAAGAAAATTCGAACCTTTGCAAAGTT GTGTACTTTCTGGAGCTACCACTGTATCTGCCAAGGAGGTTGACCATACCAGTTGTCAACGAGGAGAAATGGTCAAAGCCATTTGCAGTTGCTTCAGCCT CACTAGCTCCAATCCTTTTGACAGCATTGTTCAACACACAGTGGCAAAAGAAATCAGGGTCAAGTGGAAACAATCACCTAGTGAGCTATTTGGCAGCAGG GTTGGTAGGAATGGTGTTAGGGAATCTAGCATTTGTGAATACAAAGAGTTGCAGCCCACCCAAGAAACGGCTGCTCCTCTGGCTAGCCGGTGGGTTCATA ATGAGCGTGACGTGGACATACATAGTTGCAGAGGAGCTGGTTTCTCTACTGGTGTCAACCGGTCAAATAATCGGGATCAACCCGTCGGTTTTGGGACTTA CCTTGCTAGCTTGGGGGAATTCTCTTGGGGATTTGATAACAAATGTGGCAATGGCGGTGAATGGCGGGCCGGATGGTGCCCAGGTTGCGATATCGGGGTG CTATGCTGGGCCCATGTTTAATACTCTGTTGGGTTTGGGGATATCGTTTCTTGTCTCGTCTTGGAATGCTTACCCTTCGAGTTATGTGATTCCGGGGGAT GATTCTCTTTATGAGACTCTAGGGTTCTTGATGGCTGGGTTAGTCTGGGCTCTGCTGGTTCTTCCTATGAGGGAAATGAAACTGGAAAGGTTTCTTGGAG TGGGGCTTTTGTGTATATACTTGTGCTTCTTGGTGTTGAGGCTTGGTAGAGCTGTTGGTGGTATTGGTCTTGAAGCTTCACTGACATTGTAA
AA sequence Show only first row Show all	>Lus10013635 pacid=23171613 polypeptide=Lus10013635 locus=Lus10013635.g ID=Lus10013635.BGIv1.0 annot-version=v1.0 MENSCSIFHCKKKIILFLLNISFILLLTFFLATSNLLPPSELEHKLWGITNGTTCSELHNYTDCKSKCLYVKSHCSSKGYINYLQIYYCTLGHSPPLAYA TLLLWLSILFYLLGNTAGEYFCSSLESLSTLLKLSPTIAGVTLLSLGNGAPDVFSSIVSFTRSNNGDVGLNSVLGGAFVVSNVVVGIISILITSSHEVSI DKPSFIRDVSFFLFSLVSLLLILLVGEITLWGALLFLSIYFLYVSVVCFMHYLHGKKHNHNVSQLPMGIPLLGYINDSDIPTFSTKASIQSKENSNLCKV VYFLELPLYLPRRLTIPVVNEEKWSKPFAVASASLAPILLTALFNTQWQKKSGSSGNNHLVSYLAAGLVGMVLGNLAFVNTKSCSPPKKRLLLWLAGGFI MSVTWTYIVAEELVSLLVSTGQIIGINPSVLGLTLLAWGNSLGDLITNVAMAVNGGPDGAQVAISGCYAGPMFNTLLGLGISFLVSSWNAYPSSYVIPGD DSLYETLGFLMAGLVWALLVLPMREMKLERFLGVGLLCIYLCFLVLRLGRAVGGIGLEASLTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17860		CAX7	calcium exchanger 7 (.1)		Lus10013635 [exp]	0	1
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10001786 [exp]	8.4	0.7889
AT3G61920			unknown protein		Lus10030204 [exp]	9.5	0.8098
AT5G18850			unknown protein		Lus10033997 [exp]	10.4	0.8186
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10012372 [exp]	12.4	0.8001
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10003207 [exp]	15.3	0.7912
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10024418 [exp]	21.4	0.7789
AT4G16695			unknown protein		Lus10028968 [exp]	30.7	0.7528
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	31.7	0.7905
AT1G11570		NTL	NTF2-like (.1.2)		Lus10020061 [exp]	31.8	0.7932
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	32.9	0.7882

Compare expression of checked genes

Lus10013635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.