Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03710 1071 / 0 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT5G14580 408 / 2e-126 polyribonucleotide nucleotidyltransferase, putative (.1) AT2G47220 155 / 3e-40 ATDUF5 DOMAIN OF UNKNOWN FUNCTION 724 5 (.1) AT3G46210 54 / 2e-07 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) AT3G61620 54 / 2e-07 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT4G29060 46 / 0.0001 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001332 [exp] 1213 / 0 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10008763 [exp] 397 / 6e-123 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10022250 [exp] 389 / 1e-119 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001331 [exp] 319 / 2e-102 AT3G03710 161 / 1e-45 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10009221 [exp] 51 / 2e-06 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10043229 [exp] 50 / 1e-05 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10011108 [exp] 50 / 1e-05 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10037991 [exp] 45 / 0.0001 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10029327 [exp] 44 / 0.0006 AT3G11964 2127 / 0.0 RNA binding;RNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065700 [exp] 1172 / 0 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.019G040100 [exp] 1164 / 0 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.001G347900 [exp] 283 / 8e-81 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.014G094300 [exp] 66 / 1e-11 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.018G043600 [exp] 53 / 3e-07 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.018G083900 [exp] 50 / 8e-06 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain CL0021 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2 CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10013636 pacid=23171586 polypeptide=Lus10013636 locus=Lus10013636.g ID=Lus10013636.BGIv1.0 annot-version=v1.0 ATGGGCCGACATTTGATTTCACGTAATTACGCCCCGACTCTAGTCCTCTATCTGGCGCCACCAACGGATAAGTCTCTGCCATTTCCATTGCTACGTCTCT CACTCACTGACCCCCCCTCTCTCACTACCATAGCTCCCGGCCTCCACCTGACTTCCGACGCCGGAATGCTATCAAATCCTGGCAGCGGCGTCCTTCATGG GAAGACTTATCGCCCCCGCAGCTCGCCGTTTCAGCTTTCCAGTAGCCACTGCTGTGGCAACCTCTCCCTCTCTCCAACTTGCTCTCGTAGTCGTTGCATT GGTCCAAGGAAATCAAGCTTCTGTTCTTTGTCTCTGCTTTTCCCCAGGAAAAAATCAACTGAAAGCTTCGCTCGCCTAAGAGTCTCCCTTGGAGACCACG AAATTCCGGACTCAGTAGCTGGGGATGGACCCTCGCAGTTCTTTCCTCAATATGTTTCTGTTAAAATTCCCTACGGGGACAGGGAGATCGTGGTGGAAAC TGGTCATATTGGTAGACAAGCTAGTGGTTCTGTTATGGTCACTGATGGAGAAACTGTTGTCTATACATCTGTTTGTTTGGATGATGTTCCAAGCGAGCCT TCAGACTTTTTCCCTATGTCTGTACATTATCAAGAACGTTTTTCTGCTGCAGGCCGAACAAGTGGGGGGTTTTTCAAACGAGAGGGAAGAGCAAAAGATC ATGAGGTCCTCACTTGCCGACTCATTGATAGGCCATTACGTCCAACCATGCCTAAGGGCTTCTACCATGAAACACAGATATTATCGTGGGCAAGTACATG TTTCAATTTATTAATCTCTTTTCTATATGCTGAAGTTCATCTTCCTGTAACATTATGTGCCACATTGCATATTTTGACTGTGGTATTGAGCTATGATAGT TTGCACCCACCTGATATATTGGCAGTCACAGCTGCTGGAATAGCAGTATGTCTATCAGAGGTTCCAAATACAAAACCTATTGCAGGAGTTCGAGTTGGTC TTGTTGACGATAAGTTTATTGTAAATCCTACAAATAAAGAGATGGAGAAGTCGGTGCTAGATTTAGTCATGGCCGGTACAGATAGCGCAATATTAATGAT TGAGGGGTATTGTGATTTTCTGACCGAGGAAAAGTTGGTTGAAGCAGTAAAAATTGGTCAGGATGCAGTACGTTTGATTTGCAACGAAGTGCATGCTTTG GTGGAGAGATGTGGAAAACCAAAAATGATCGATGCTATAAAGTTACCTCCTCTTGAGCTATATAAACATGTCGAGGAAATGGCTGGTGATGAATTAGTCA AAGTGCTACAGATTAGGAACAAAATACCAAGAAGAAAGGCCATTTCAGCTTTGGAGAAAAAAGTAACTGATATACTTACAGAGGAAGGCTATGTTGCTAA GGGGTTAGATTCAGGAGCTACTGAACCAACATTAGACTTGCTTGAAGAGGAAGATGATGATGAAGAGGTTATTGTGGACGGCGAAGTAGATGAAGGTGAT GTCCACATAAAGCTAGTCCCAAAGGAACCTCCTCCTAAGTTGTTCTTGGAGCGTGATGTAAAGCTTGTATTCAAAGAGGTTTCATCAAAACTCTTGCGCC AGCGAATCGTGCAGGGTGGGAAAAGGAGTGATGGGCGAACCCCAACCGGAATACGTCCAATAGATTCAAGATGTAGCTTACTACCCAGAGCTCATGGGAG CTCCCTTTTCACCCGTGGAGAAACACAGGCCTTGGCTGTGGCTACTCTTGGTGATCAGCAAATGGCTCAAAGAGTTGACAACCTTGTGGACGAAGAGGAA TTTAAGAGGTTTTATCTTCAGTATTCATTTCCTCCATCATCTGTCGGGGAAGCAGGGCGAATGGGAGGCCCCAATAGACGAGAAATTGGGCATGGTATGC TTGCGGAGAGAGCTCTTGAACGTATATTGCCTCCTGAAGACATTTTCCCATACACTATACGAGTTGAGAGTACTATTACCGAGAGCAATGGTTCCTCAAG CATGGCTTCTGTATGTGGAGGTTGTTTGGCATTACAAGATGCCGGTGTTCCTGTAAAATGCTCTATTGCAGGCATTGCAATGGGTATGGTCTTTGACACT AAAGAATTTGGAGGTGATGGAACACCACTTATTCTTTCTGACATCACTGGAGCTGAAGATGCTTCTGGAGATATGGACTTCAAGGTTGCTGGAAACGAGG ATGGAATTACTGCATTTCAGATGGACATAAAGGTTGCAGGAATCACTTTACCGGTTATGAGAGACGCATTATTACAGGCTAGGGACGGAAGGAAGCATAT TCTTGCTGAAATGTCGAAATGTTTGCCACCCCCTTCTAAAAAGCTGTCCAAGTATGCACCACTCATACACATTATGAAGGTGGACCCGCAAAAGGTTAAC TTACTCATTGGTCCTGGTGGAAAGAAGGTTAGGAGTATTATCGAAGAAAGTGGTGTGGAGGGTATTGACACACAAGATGATGGAATTATAAGGATCACTT CGAAGGATTTATTAAGTCTAGAGAAATCGAAATCCATTATCTCTAGACTTTTAAAGGTTCCAACCGTCGGTGATATATATAGGAACTGTGAGATCAAATC AATAGCTCCATATGGTGTCTTTGTTGAAATAGGCCCCGGCCGTGAGGGACTTTGCCATATTAGTGAACTTACTGCCACTTATCTGGCGAAGGCAGAAGAT ATTTTTAAGGTTGGAGACAAGGTGGATGTTAAGCTTATCGAGGTAAATGACAAGGGACAGCTCCGCCTTAGCCGCAAAGCCTTACTTCCTGAACAAGCTC CAGCGAGTAATGCAAAAACCATAAACACCCCAAAAGGAAAGACAGCGGACGATACTTCTTCTGTGCAAAAGAAGAAAAAGTCAGGCAGCTCTGCCAAAGA AGATGTAACTATAATTAAAGACCCGCCAAAGAAGAGTCCGACTGGAAAAGACAGTTTAGTAAACGGAGAGGCTGCCATGGGATAG
AA sequence Show only first row Show all	>Lus10013636 pacid=23171586 polypeptide=Lus10013636 locus=Lus10013636.g ID=Lus10013636.BGIv1.0 annot-version=v1.0 MGRHLISRNYAPTLVLYLAPPTDKSLPFPLLRLSLTDPPSLTTIAPGLHLTSDAGMLSNPGSGVLHGKTYRPRSSPFQLSSSHCCGNLSLSPTCSRSRCI GPRKSSFCSLSLLFPRKKSTESFARLRVSLGDHEIPDSVAGDGPSQFFPQYVSVKIPYGDREIVVETGHIGRQASGSVMVTDGETVVYTSVCLDDVPSEP SDFFPMSVHYQERFSAAGRTSGGFFKREGRAKDHEVLTCRLIDRPLRPTMPKGFYHETQILSWASTCFNLLISFLYAEVHLPVTLCATLHILTVVLSYDS LHPPDILAVTAAGIAVCLSEVPNTKPIAGVRVGLVDDKFIVNPTNKEMEKSVLDLVMAGTDSAILMIEGYCDFLTEEKLVEAVKIGQDAVRLICNEVHAL VERCGKPKMIDAIKLPPLELYKHVEEMAGDELVKVLQIRNKIPRRKAISALEKKVTDILTEEGYVAKGLDSGATEPTLDLLEEEDDDEEVIVDGEVDEGD VHIKLVPKEPPPKLFLERDVKLVFKEVSSKLLRQRIVQGGKRSDGRTPTGIRPIDSRCSLLPRAHGSSLFTRGETQALAVATLGDQQMAQRVDNLVDEEE FKRFYLQYSFPPSSVGEAGRMGGPNRREIGHGMLAERALERILPPEDIFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPVKCSIAGIAMGMVFDT KEFGGDGTPLILSDITGAEDASGDMDFKVAGNEDGITAFQMDIKVAGITLPVMRDALLQARDGRKHILAEMSKCLPPPSKKLSKYAPLIHIMKVDPQKVN LLIGPGGKKVRSIIEESGVEGIDTQDDGIIRITSKDLLSLEKSKSIISRLLKVPTVGDIYRNCEIKSIAPYGVFVEIGPGREGLCHISELTATYLAKAED IFKVGDKVDVKLIEVNDKGQLRLSRKALLPEQAPASNAKTINTPKGKTADDTSSVQKKKKSGSSAKEDVTIIKDPPKKSPTGKDSLVNGEAAMG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	0	1
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	1.0	0.9880
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	1.4	0.9701
AT1G68890			magnesium ion binding;thiamin ...		Lus10030915 [exp]	1.7	0.9689
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	2.6	0.9531
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	2.8	0.9678
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026991 [exp]	4.2	0.9513
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	4.7	0.9458
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10042915 [exp]	4.9	0.9432
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10002107 [exp]	5.1	0.9430
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	5.9	0.9633

Compare expression of checked genes

Lus10013636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.