Plant FIBer expression Database

Lus10013637 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G37480 92 / 1e-23 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001333
[exp]
272 / 1e-93 AT5G37480 117 / 1e-33 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G065200
[exp]
129 / 1e-37 AT5G37480 113 / 2e-32 unknown protein
PFAM info
Representative CDS sequence
>Lus10013637 pacid=23171608 polypeptide=Lus10013637 locus=Lus10013637.g ID=Lus10013637.BGIv1.0 annot-version=v1.0
ATGGCGGAAGAAGCTTCAAAACCCGAATCCACTCACCAGCCTCCTCCTTCTCCATTTGTAGAGGTAGAATGCAAAATATCGAAGAAAAAGAGACGGTTTG
CTGCGGGTACCAAGGCAGGATTCGCAGTATCTCTGATAAACAGGAAGTTGGATAGTGGGCACCCTCCTCTACCTCTAGCTTTCGCTATTGAATCTGTCAA
AGACGGCGAGGAACCCGTCAGCTTTGGCCCAGATGCCCCTCTCGTTCACTATGGCAATGCCTGGAACTTGCAGGCCGTCACTGAATTGGATTATCCTCTT
CCTCCTCCTCCGCCTGGTACAAAAGCTTCCTCCTTTGTGCTGGGATTTCCTAATAGATTTTATTCTTTGCCCGACGTCAGCTCAGGTTTGATTGTTGCTG
TTTGCTTAAAAGCAGGTGGGGAGAATCTCAAAGTTCCACCGACTGCCACGCCTGAAAACCCTTTTACGACTGGGGAGGAGGATTCTTATGGCTCAGTTCC
AGGTAGAAGGAGAACAGCAGCAAAGCCTGCAGCAATCAGCGGAGTGTACATTGCCAAGATACTGCTGGCCTTCGTTTTGATATTTGTACTGGGCTCAGCT
TTCACAATAGCTCTTGAAAATCTTCCCAAGTTGATACTGCTCCTCAACTCCTTCATGTAA
AA sequence
>Lus10013637 pacid=23171608 polypeptide=Lus10013637 locus=Lus10013637.g ID=Lus10013637.BGIv1.0 annot-version=v1.0
MAEEASKPESTHQPPPSPFVEVECKISKKKRRFAAGTKAGFAVSLINRKLDSGHPPLPLAFAIESVKDGEEPVSFGPDAPLVHYGNAWNLQAVTELDYPL
PPPPPGTKASSFVLGFPNRFYSLPDVSSGLIVAVCLKAGGENLKVPPTATPENPFTTGEEDSYGSVPGRRRTAAKPAAISGVYIAKILLAFVLIFVLGSA
FTIALENLPKLILLLNSFM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G37480 unknown protein Lus10013637
[exp]
0 1
AT5G25220 HD KNAT3 KNOTTED1-like homeobox gene 3 ... Lus10003183
[exp]
2.0 0.9330
AT4G08690 Sec14p-like phosphatidylinosit... Lus10033464
[exp]
2.6 0.9159
AT1G23440 Peptidase C15, pyroglutamyl pe... Lus10029137
[exp]
6.9 0.9247
AT1G74790 catalytics (.1) Lus10033116
[exp]
7.2 0.9252
AT5G49760 Leucine-rich repeat protein ki... Lus10007587
[exp]
9.4 0.9212
AT1G72710 CKL2 casein kinase 1-like protein 2... Lus10006018
[exp]
10.7 0.9171
AT3G52230 unknown protein Lus10028838
[exp]
11.0 0.9081
AT1G79915 Putative methyltransferase fam... Lus10035886
[exp]
11.8 0.9019
AT1G75560 zinc knuckle (CCHC-type) famil... Lus10031093
[exp]
11.8 0.9071
AT4G21790 ATTOM1, TOM1 tobamovirus multiplication 1 (... Lus10007663
[exp]
12.6 0.9156

Lus10013637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.