Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22320 342 / 2e-121 RPB5A, NRPD5, NRPB5, ATRPABC24.3 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) AT5G57980 188 / 1e-60 RPB5C "RNA polymerase II fifth largest subunit, C", RNA polymerase II fifth largest subunit, C (.1) AT2G41340 141 / 5e-42 RPB5D "RNA polymerase II fifth largest subunit, D", RNA polymerase II fifth largest subunit, D (.1) AT3G57080 134 / 3e-39 RPB5B, NRPE5 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) AT3G54490 124 / 3e-35 RPB5E "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) AT3G16680 78 / 7e-19 DNA binding;DNA-directed RNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001335 [exp] 417 / 5e-151 AT3G22320 342 / 3e-121 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10018022 [exp] 141 / 1e-41 AT3G57080 280 / 6e-96 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10024169 [exp] 109 / 2e-29 AT3G54490 221 / 7e-73 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Lus10039554 [exp] 107 / 3e-28 AT3G54490 184 / 6e-58 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Lus10042019 [exp] 102 / 6e-27 AT3G57080 239 / 4e-80 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G161600 [exp] 361 / 7e-129 AT3G22320 365 / 2e-130 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Potri.016G038500 [exp] 141 / 7e-42 AT3G57080 286 / 1e-98 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Potri.001G025500 [exp] 120 / 1e-33 AT3G54490 249 / 1e-83 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01191 [flax] [poplar] RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain CL0236 [flax] [poplar] PDDEXK PF03871 [flax] [poplar] RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013639 pacid=23171580 polypeptide=Lus10013639 locus=Lus10013639.g ID=Lus10013639.BGIv1.0 annot-version=v1.0 ATGGCTCTGGGAGAGGAGGAAATCAGGAGACTCTTTAGGATTCGAAAGACTGTGTTGGAGATGCTGAGGGATCGTGGTTATTTGATTGGCGACTTCGAAT TTAAGCTAACAAAGGAACAGTTTGTTTCAAAGTATGGCGACAACATGAAAAGGGAAGACCTTACAATCCAGAAAGAAAAGAAAAACGATGTCTCTGATAA GATATACGTTTTCTTCCCAGAGGAAGCAAAAGTTGGTGTGAAAACAATGAAGACATATATTAACCGCATGAAATCAGAGGATGTCCTCCGAGCAATCTTG GTTGTTCAGACGAATTTGACTCCATTTGCCAGAACATGTATCTCTGAAATGTCAAGCAAATTCCAGTTGGAGGTTTTCCAGGAGGCAGAGCTGCTGGTCA ATATAAAAAACCATGTTCTTGTTCCCACACATGAGGTGCTTACAAATGAGGAGAAGAAGACCCTACTAGAAAGATACACAGTGAAAGAAACTCAGCTGCC TAGGATCCAGTTGACTGATCCGATTGCCAGATATTACGGACTGAAGCGAGGCCAAGTGGTGAAGATCATAAGGCCAAGTGAGACTGCTGGAAGATACGTA ACCTACAGATATGTTGTTTGA
AA sequence Show only first row Show all	>Lus10013639 pacid=23171580 polypeptide=Lus10013639 locus=Lus10013639.g ID=Lus10013639.BGIv1.0 annot-version=v1.0 MALGEEEIRRLFRIRKTVLEMLRDRGYLIGDFEFKLTKEQFVSKYGDNMKREDLTIQKEKKNDVSDKIYVFFPEEAKVGVKTMKTYINRMKSEDVLRAIL VVQTNLTPFARTCISEMSSKFQLEVFQEAELLVNIKNHVLVPTHEVLTNEEKKTLLERYTVKETQLPRIQLTDPIARYYGLKRGQVVKIIRPSETAGRYV TYRYVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Lus10013639 [exp]	0	1
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	8.0	0.8938
AT2G17070			Arabidopsis protein of unknown...		Lus10007109 [exp]	13.4	0.8455
AT1G19980			cytomatrix protein-related (.1...		Lus10021095 [exp]	13.5	0.8556
AT1G55340			Protein of unknown function (D...		Lus10013412 [exp]	20.3	0.8701
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10029049 [exp]	24.0	0.8278
AT4G14420			HR-like lesion-inducing protei...		Lus10041149 [exp]	25.3	0.8393
AT5G57230			Thioredoxin superfamily protei...		Lus10003582 [exp]	28.4	0.8436
AT4G14420			HR-like lesion-inducing protei...		Lus10021877 [exp]	29.9	0.8266
AT5G08420			RNA-binding KH domain-containi...		Lus10042479 [exp]	32.7	0.7918
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10037613 [exp]	36.7	0.8361

Compare expression of checked genes

Lus10013639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.