Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17690 227 / 9e-70 AtLHP1, LHP1, TFL2 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001338 [exp] 551 / 0 AT5G17690 240 / 3e-74 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Lus10005669 [exp] 291 / 2e-95 AT5G17690 237 / 5e-74 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Lus10020324 [exp] 267 / 1e-85 AT5G17690 223 / 3e-68 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070400 [exp] 290 / 2e-94 AT5G17690 259 / 4e-82 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Potri.019G044400 [exp] 273 / 8e-87 AT5G17690 268 / 2e-84 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00385 [flax] [poplar] Chromo Chromo (CHRromatin Organisation MOdifier) domain
Representative CDS sequence Show only first row Show all	>Lus10013641 pacid=23171592 polypeptide=Lus10013641 locus=Lus10013641.g ID=Lus10013641.BGIv1.0 annot-version=v1.0 ATGGATCACCAAATCCAATTCCCCATCCAGATGAATCCCAAGCGGAAAGCATCTCCCACTTCAATTCCGCTACCACCAAATGGCACTGCCACCGCTGAAG ACGATCATGATCATGCAGCTGTTAGCGACGGATTGGAACCTGCTACCTACGCTACTGAGACTGCAGCAATTCGCGATGGGAATCATGGAAGTCAGAGGAA ATGCGAGAATGTTGGAAATGAAGGGGATGGTGTAGAGGAAGTTGATGATGATGATGATGTAGAAGCAGATGAAGAACAAGATCAAGAAGAAGAAGAAGAA GAAGCCGAAGCAGAAGCAGCAGCTGAAGCTGAAGATGAGCCCCCCAAGCTCGATGAGGGTTTCTTTGAAATCGAGTCAATTCGGCGTAAAAGAGTTCGCA AGGGCCAGCTTCAGTATCTCATTAAATGGCGAGGCTGGCCAGAAACTTCTAATACGTGGGAACCTCTAGAACATTTGCAGTCATGTTCTGATGTTATTGA CGCTTTTGAAGAGAGTTTGCTATCCGGAAAATCTTCCCGGGAACGGAAACGCAAGTGGGGTGTCTCTAATTCGCACAACAAAAAGAAGCAGCCACGTACT TCTTCCTGGAACAATGTCACAGGTGATGATGACAGAAGAAGTCTACCTTCCACTTCTCTGAATACATCAAGCCTTGCTAGTCTTCCTGCTTATACTCAAG AAGAGGATAACAATATATATGATCCTAAGCTCCGTGAGCTGAGAGGATCAAGACCTTCTAACAATGCAGATGCTGATAGGGTTTCTGTACAGTTAGATGC CAAGTCTCCAGCAGTTGAAAATGGACTTCTCAAGGTTGATTCTGTGGACACTGCTCAGAACAACCGTCAAAAGGATGCTAAGAGAAGGAAGTCTGCTTCT GTGAAGCGATTTAGAAAAGATCAAGCTTCTTGTGATCCTACAGATACTTCGTTATCTAAGTTTTCTCTCAGCGGCGGTACATCTGCACAGCTAAAGACTG AAACTTTTAGTTTAACAGGCTGCGGTTCTGATTACAAGGTTGAATCTCCTATCATCAAGATTCTCAAACCCGTCAGCTTTTCAAATTCTTCATCTGACAA CATTCAAGATGTGATCGTAACTTTTGTTGCTTTGAGGTCTGATGGCAAGGAAGTAGTCGTGGATAACAAATTTTTGAAGGCTCACGATCCTCTTCTGTTG ATCAATTTTTATGAGAAGCATCTCAAGTATAGTGCATGA
AA sequence Show only first row Show all	>Lus10013641 pacid=23171592 polypeptide=Lus10013641 locus=Lus10013641.g ID=Lus10013641.BGIv1.0 annot-version=v1.0 MDHQIQFPIQMNPKRKASPTSIPLPPNGTATAEDDHDHAAVSDGLEPATYATETAAIRDGNHGSQRKCENVGNEGDGVEEVDDDDDVEADEEQDQEEEEE EAEAEAAAEAEDEPPKLDEGFFEIESIRRKRVRKGQLQYLIKWRGWPETSNTWEPLEHLQSCSDVIDAFEESLLSGKSSRERKRKWGVSNSHNKKKQPRT SSWNNVTGDDDRRSLPSTSLNTSSLASLPAYTQEEDNNIYDPKLRELRGSRPSNNADADRVSVQLDAKSPAVENGLLKVDSVDTAQNNRQKDAKRRKSAS VKRFRKDQASCDPTDTSLSKFSLSGGTSAQLKTETFSLTGCGSDYKVESPIIKILKPVSFSNSSSDNIQDVIVTFVALRSDGKEVVVDNKFLKAHDPLLL INFYEKHLKYSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10013641 [exp]	0	1
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043339 [exp]	1.7	0.8105
AT5G61390			Polynucleotidyl transferase, r...		Lus10000567 [exp]	8.0	0.7593
AT1G71360			Galactose-binding protein (.1)		Lus10002929 [exp]	8.7	0.7791
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	9.6	0.8012
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	9.9	0.7843
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	14.3	0.7763
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034415 [exp]	18.2	0.7488
AT5G14940			Major facilitator superfamily ...		Lus10039465 [exp]	19.9	0.7103
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	21.9	0.7721
AT1G15060			Uncharacterised conserved prot...		Lus10043481 [exp]	26.2	0.7321

Compare expression of checked genes

Lus10013641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.