Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09720 615 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 211 / 7e-62 DEA(D/H)-box RNA helicase family protein (.1) AT3G58510 210 / 1e-60 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 206 / 3e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G58570 207 / 4e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 206 / 7e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01540 202 / 2e-57 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G20920 203 / 9e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G06480 204 / 1e-56 DEAD box RNA helicase family protein (.1) AT2G33730 201 / 2e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026871 [exp] 983 / 0 AT3G09720 673 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 211 / 5e-61 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 209 / 5e-61 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 209 / 6e-61 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10016207 [exp] 210 / 1e-60 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 209 / 1e-60 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 207 / 3e-60 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 207 / 1e-59 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 206 / 5e-59 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G065300 [exp] 614 / 0 AT3G09720 652 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 214 / 3e-63 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 216 / 1e-62 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G007900 [exp] 214 / 4e-62 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G084600 [exp] 212 / 3e-61 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G217800 [exp] 210 / 2e-60 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 209 / 4e-60 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G130900 [exp] 205 / 4e-59 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 202 / 3e-58 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G185900 [exp] 205 / 1e-57 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10013644 pacid=23171628 polypeptide=Lus10013644 locus=Lus10013644.g ID=Lus10013644.BGIv1.0 annot-version=v1.0 ATGGAGCAAGGCGCCACCTCTTTTCTTTTCGCTGGCACCAAATTCCGCAAGGATAAGTTCGCCGGTGTCTTTGCTCGCTTTCAGGGAAAGAAAGAAATCG AGAATGCTGATTCGGATTCGAGCTTGTTGCCGAGTGGGAATACTGAAGCTGAAGTTGAGCAAGTTAGGAGCCCTCCTAAGAAGCGGAAGCGGAAAAATTC GTCAGCCGATGGTGTAGAGGGATTCAGTGTCTTCAAGCCCTCAAAGGAGACGGAGAGTTCTGGTTCCATTGAGCAGAACCGCGAGGATTCACATGAGGAG GCTTTGAGGGAGAAGAAGAAGGAATTGAATAAGCAGATTCAGGGCTTGTTGGAATCTTACTATCATCATGGGTATGGATGTGATCCCTACTTGCTATGCA ACTTGAAAGAATTTGGATATAAGGAACCAACCCCAATCCAGAGACAGACTATACCAGTTATTCTATCTGGCCGTGAATGCTTTGCTTGCGCTCCAACAGG ATCTGGGAAGACTTTGGCATTTGTATGTCCCATCCTGATGAAGCTTAAGAACCCATCAAAGGATGGCATTAGAGCTCTTATATTGTGTCCAACAAGAGAG TTGGGTCTTCAAACTTCAAGAGAGTGCATGAAGATGGCTAGAGGAAATAAGTTTCGTATTAGGATATTGAAGAAAGAGCATCTGAAGAATCCTAATAAGT TTCTTTGTGATATTTTGATATCAACTCCTCTTCGGTTGAAGATTGCCATTAGCAAGAAAAAAGTTGACTTATCCAGGGTTGAGTTCCTTGTTCTCGATGA ATCGGATAAGCTGTTTGAGCCCGGCATGTTGAAGCAGACGGATTATGTGGTTAAAGCATGTTCTAATCCCTCGATAGTGCGGTCACTATTCAGTGCTACC TTGCCTGATTATATTGAAGACCTTGCACGATCTGTGATGCATGATGCCGTTCGAATTGTCATTGGCATGAAGAACACCGCATCTGAAACTATAAAGCAGA AACTGATATTTGCAGGAAGTGAGGAGGGGAAACTTATTGCACTTCGACAAAGCTTTGCAGAGAGTCTGAATCCACCGGTGTTGATCTTCCTTCAAAGCAA GGAACGTGCTAAAGACCTATTTGAGGAACTAAAATATGAAGACATCAGAGTCGATGTTATCCACTCAGATTTGTCCGAGAAACAGCGAGAAACTTCGGTG GATGACTTTAGAGCAGGGAAAACATGGGTGTTGATAGCTACCGATGTGGTTGCCCGGGGTATGGATTTCAAAGGAGTGAACTGCGTGATCAATTACGATT TCCCTGATTCGACTGCGGCATACATTCACAGGATTGGTCGGACAGGAAGGGCGGGGAGAAGCGGGGATGCTGTTACATTATACACAGAAGCAGACATTCC GCTTCTTCGAAACATAGGTAATGTTATGAAGCAGAAAAACCAAGAGAAGAGGGATAACGCTGTTTCAGGGCAGGAGTACGAGTTCCCGTCTTGGATATTG GATCTGCCTAAACGCAAGTGGAGGAAATACCGTCCTGGTAGAGACGCAATTTCAACTGCCCTAAAGGATTAA
AA sequence Show only first row Show all	>Lus10013644 pacid=23171628 polypeptide=Lus10013644 locus=Lus10013644.g ID=Lus10013644.BGIv1.0 annot-version=v1.0 MEQGATSFLFAGTKFRKDKFAGVFARFQGKKEIENADSDSSLLPSGNTEAEVEQVRSPPKKRKRKNSSADGVEGFSVFKPSKETESSGSIEQNREDSHEE ALREKKKELNKQIQGLLESYYHHGYGCDPYLLCNLKEFGYKEPTPIQRQTIPVILSGRECFACAPTGSGKTLAFVCPILMKLKNPSKDGIRALILCPTRE LGLQTSRECMKMARGNKFRIRILKKEHLKNPNKFLCDILISTPLRLKIAISKKKVDLSRVEFLVLDESDKLFEPGMLKQTDYVVKACSNPSIVRSLFSAT LPDYIEDLARSVMHDAVRIVIGMKNTASETIKQKLIFAGSEEGKLIALRQSFAESLNPPVLIFLQSKERAKDLFEELKYEDIRVDVIHSDLSEKQRETSV DDFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSTAAYIHRIGRTGRAGRSGDAVTLYTEADIPLLRNIGNVMKQKNQEKRDNAVSGQEYEFPSWIL DLPKRKWRKYRPGRDAISTALKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	0	1
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	1.0	0.9682
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	1.4	0.9644
AT1G69070			unknown protein		Lus10036815 [exp]	3.2	0.9525
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	3.5	0.9575
AT3G25430			Polynucleotidyl transferase, r...		Lus10009563 [exp]	4.2	0.9543
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10007574 [exp]	5.8	0.9388
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10021978 [exp]	6.7	0.9529
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	6.9	0.9538
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	7.2	0.9502
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10010163 [exp]	7.7	0.9558

Compare expression of checked genes

Lus10013644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.