Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20950 498 / 6e-172 Glycosyl hydrolase family protein (.1.2) AT5G04885 485 / 4e-166 Glycosyl hydrolase family protein (.1) AT5G20940 463 / 3e-158 Glycosyl hydrolase family protein (.1) AT3G62710 399 / 5e-133 Glycosyl hydrolase family protein (.1) AT3G47000 387 / 7e-129 Glycosyl hydrolase family protein (.1) AT3G47040 379 / 4e-125 Glycosyl hydrolase family protein (.1.2) AT3G47010 361 / 2e-118 Glycosyl hydrolase family protein (.1.2) AT3G47050 357 / 7e-117 Glycosyl hydrolase family protein (.1.2) AT5G10560 62 / 7e-10 Glycosyl hydrolase family protein (.1) AT3G19620 55 / 1e-07 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010657 [exp] 681 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 627 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010656 [exp] 612 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 523 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10001151 [exp] 498 / 1e-171 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 490 / 1e-168 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 489 / 3e-168 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 489 / 1e-167 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10023604 [exp] 480 / 2e-164 AT5G20950 822 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G037400 [exp] 545 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 541 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 523 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.009G153900 [exp] 515 / 2e-178 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013700 [exp] 491 / 3e-169 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 390 / 7e-130 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 291 / 6e-96 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 205 / 9e-63 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 173 / 2e-51 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 127 / 3e-34 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013647 pacid=23171615 polypeptide=Lus10013647 locus=Lus10013647.g ID=Lus10013647.BGIv1.0 annot-version=v1.0 ATGCAAAAAGGATTAAAGTTTTGTCTTGAAGCAAAAAGAGGATTGGAGTTTTTGCTTCCTTCCCTCCGCGACAGATCAGAGATAGCAATGGTGTCGCCAG GACGAGACGATGCTGAAAATAAACAAGGAAAAGACGCGCTGCAGTTGGGTAAAGAAGAACCAGCGACGACGTTCAAGGGTATACGAGACCCGGAGCTGGT GAAGAGAATAGGTGCAGCAACTGCGCTTGAAGTGAGGGCCACTGGTATTCCATATGTTTTCGCTCCATCTATTGCTAGCTATCCATCACGTAGCAAGACC GGCGATCTTGCCGCTAACTCCGACAAGGGTATTCCTTATGTTGCAGGAAAGACGAAAGTGGCGACCTGCACTGAGAACTTTGTTGGAGATGGTGGAACTG TTGATGGAATCGACGAGAATAACACCATCATCGACTGGGATGGACCGATGAAGATCCACATGCCTCCATACTATACCTCCATAAGTAAGGGAGTTTCCAG TGTCCTGATCTCTTACTCTAGCTTGAACGGAATCAAGATGCACGCTAACCAGAAGATGATCACTGACTTCCTCAAGGGAACTCTTCGTTTCATGGGTTTT GTGATTTCAAACTGGGAACGAATTGACAGGATCACCAGCCCACCATATACTAATTACACTTACTCTGTAGAGACGGCAAATCCTGCTGGAATTGACATGG TCATGGTTCCACACAACTACACTGAATTCATTGAAGATCTAACAATGCTAGTGAACAAAGGGTTCATCCCCATAAGCCGAATTGACGATGCAGTCAAGAG AATCTTGAGAGTCAAGTTTGTGATGGGTCTGTTTGAAGCCCCAATGGCTGATGAGAGCTTGGTTCATGAGCTTGACAGCAAAGAGCACAGAGCATCGGCA AGAGAAGCTGTAAGGAAATCACTTGTGCTGTTGAAGAATGGTAAAGATGCTAACCAACCATTACTACCATTCCCTAAGAAGGCTCCAAAGATTCTTGTTG CAGGCGCCCATGCCGATAATCTTGGATACCAATGTGGTGGATGGGCAATTGAGTGGAAAGGATTCAGCGGCAATGACCGTACAACTGGGACCACAATCCT CTCTGCCATAAAAAGCACAGTTGATCCAAGCACTGAAGTTGTATACCAAGAAAACCCTGCCGAAGAGTACGTGAAGTCCAACAACTTCTCATACGCCATC GTTGTGGTAGGAGAGCAACCTTATGCAGAAGCAATGGGTGATAGCTCGAACTTGATGATCCCTAGTCATGGCCTAAGCACCATCCAGAATATTTGCTCAG CGGTGAAGTGTGTCGTTGTTGTCATCTCCGGTCGTCCTGTTGTGATTGAACCCTATGTGAGCCCATTGTTCCTGCCTGTCTCCCTGGAACTGAAGGTCAA GGTGTGGCTGATGTTCTGTTCGGAGACTATGGCTTCACTGGGAAACTTCCAAGGCCATGGTTCAAGAGAGTTGATCAGCTGCCTATGA
AA sequence Show only first row Show all	>Lus10013647 pacid=23171615 polypeptide=Lus10013647 locus=Lus10013647.g ID=Lus10013647.BGIv1.0 annot-version=v1.0 MQKGLKFCLEAKRGLEFLLPSLRDRSEIAMVSPGRDDAENKQGKDALQLGKEEPATTFKGIRDPELVKRIGAATALEVRATGIPYVFAPSIASYPSRSKT GDLAANSDKGIPYVAGKTKVATCTENFVGDGGTVDGIDENNTIIDWDGPMKIHMPPYYTSISKGVSSVLISYSSLNGIKMHANQKMITDFLKGTLRFMGF VISNWERIDRITSPPYTNYTYSVETANPAGIDMVMVPHNYTEFIEDLTMLVNKGFIPISRIDDAVKRILRVKFVMGLFEAPMADESLVHELDSKEHRASA REAVRKSLVLLKNGKDANQPLLPFPKKAPKILVAGAHADNLGYQCGGWAIEWKGFSGNDRTTGTTILSAIKSTVDPSTEVVYQENPAEEYVKSNNFSYAI VVVGEQPYAEAMGDSSNLMIPSHGLSTIQNICSAVKCVVVVISGRPVVIEPYVSPLFLPVSLELKVKVWLMFCSETMASLGNFQGHGSRELISCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04885			Glycosyl hydrolase family prot...		Lus10013647 [exp]	0	1
AT5G52580			RabGAP/TBC domain-containing p...		Lus10039968 [exp]	4.7	0.7830
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	18.3	0.7614
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10005428 [exp]	33.8	0.7553
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	35.2	0.7662
					Lus10041677 [exp]	56.5	0.7511
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10023482 [exp]	65.3	0.7148
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	75.3	0.7357
AT5G38790			unknown protein		Lus10003044 [exp]	94.1	0.7010
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10008148 [exp]	97.5	0.6719
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Lus10035033 [exp]	106.1	0.7018

Compare expression of checked genes

Lus10013647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.