Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03790 1246 / 0 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein AT5G63860 129 / 2e-31 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G60870 119 / 2e-28 RUG3 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) AT1G27060 110 / 1e-25 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 111 / 1e-24 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G16040 105 / 6e-24 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G42140 108 / 1e-23 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G02510 103 / 2e-23 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G19420 103 / 4e-22 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G65920 103 / 4e-22 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010659 [exp] 2036 / 0 AT3G03790 1245 / 0.0 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein Lus10039618 [exp] 127 / 7e-31 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 121 / 9e-29 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10042215 [exp] 119 / 4e-28 AT5G60870 547 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10035957 [exp] 115 / 3e-27 AT5G08710 504 / 1e-178 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10033543 [exp] 102 / 9e-23 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10042800 [exp] 105 / 1e-22 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10037219 [exp] 101 / 3e-22 AT1G27060 424 / 1e-147 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029772 [exp] 103 / 4e-22 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G055300 [exp] 1393 / 0 AT3G03790 1320 / 0.0 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein Potri.007G100200 [exp] 130 / 6e-32 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 118 / 1e-26 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G101800 [exp] 111 / 6e-26 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 108 / 9e-25 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G000600 [exp] 107 / 3e-24 AT5G60870 534 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Potri.005G071000 [exp] 107 / 3e-24 AT5G08710 515 / 0.0 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G080900 [exp] 107 / 2e-23 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.002G070300 [exp] 107 / 3e-23 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 105 / 1e-22 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10013648 pacid=23171601 polypeptide=Lus10013648 locus=Lus10013648.g ID=Lus10013648.BGIv1.0 annot-version=v1.0 ATGCAAGTCACTTCTCGGAAACTCTCGCCTTCAAGTTCTCGGAAAGATCTGTGGCTCACTGTACGAGAAGGGTCACTGGCTGATGTCGATTCTATATTGG CATTGCTAAAGAAAAATGGGGCCAACATCAATTCACGTAATTCAATGGGCCTCACTCCTCTTCATATTGCTACTTGGAGAAATCACATTCCCATTGTTAG GAGGCTTCTTGCTGCTGGTGCTGACCCTGATGCAAGGGATGGAGAATCAGGATGGAGTAGTCTGCATAGGGCTCTGCATTTTGGTCATCTTGCAGTGGCG AGTGTACTCCTCCAGTCTGGTGCTTCCATTTCTTTGGAGGACTCTAAATTCTGTACGCCAGTTGATCTCTTGTCTGGACCTGTAGCTCAGGTTCTTGGGG ATGGATCTGACTCGGCTACTGAGGTGCTAAGTTGGGGAAGTGGTGCCAATTATCAACTTGGCACTGGAAATTCCGACTTACAAAAGCTGCCCTGCAAAGT TGATACACTTCATGGTTCCTTAACTAGACTGGTATCTGCTGCAAAGTTTCACAGTGCAGCAGTTAGTGCCCACGGAGAAGTGTATACATGGGGATTTGGA AGAGGGGGCCGTCTTGGACATCCCGACTTTGATATCCATAGTGGCCAAGCAGCTGTAATCACACCTCGCCAGGTGACTTCTGGAATAGGCAGCCGACATG TAAGGGCTATTGCTGCCGCTAAACATCACACTGTTCTTGCTACAGAGGGCGGGGAAGTTTTCACCTGGGGATCTAACAGAGAAGGTCAGTTGGGTTACAC TGTGGACACTCAACCAACACCTCGCAGAGTTAGTTTCATCAAGTCAAAGATTGTCGCGGTTGCTGCCGCTAACAAACACAGTGCTGTTGTTTCCGACTCT GGTGAAGTGTACACATGGGGCTGCAATAGTGATGGCCAGCTTGGTTATGGCACCTCTAACTCAGCATCCAATTACACTCCACGTGTAGTCGAGTCTTTGA AAGGGAAGGTATTTACAGGAGTTGCAGCTGCAAAATCTCATACTGTTGCCTTACGGAGTGATGGCGAGGTTTACACCTGGGGCCATCGTCTTGTTACCCC AAGACGTGTTATCGTTTCAAGAAATCTGAAGAAAAGTGGGGGTACCCCTCTGAAGTTTCACCGCATGGAGCGTCTTCATGCTGTAGCCATTGCTGCTGGG ATGGTGCATAGCCTGGCTCTTATGGATGATGGTGCCCTGTTTTATTGGGCTTCTGCAGATCCTGATCTTAAATGCCAACAGCTGCATACACTCTGTGGGA GAAGTATTGTGAGCGTATCTGCTGGTAAGTATTGGGGTGCAGTAGTCACCGATACTGGTGATGTGTACACTTGGGATAGCAAACAAGACAGGAATAAGTC GCCAGTTCCTACACGATTACATGGTGTAAAAAGGGCTACGTCAGTTGTAGTTGGAGAAACGCATTTATTAGTTGTTAGCTCTCTCTATCATCCGCCCATT TCCCCTAATGCTGCCGAGATCAATCACAGACAGAAGTTGCAAGATAAGAGTGATATGGAAGACCTCGAAGATTTCCTATTTGACCGTACTGAGTCGAAAG ACGAGCTATATGTTGAAGACGATAAGAATACTGGACAAAGGTCTGTGCCAAGCTTAAAGTCCCTGTGCGAGAAGTCAGCAGCAGATAATTTAGTAGAGAC TCGAAATGCTGTACAAATGCTTGAAATTGCTGACACACTTGAGGCGGATAATCTGAAGAAGCATTGTGAGGACATTGTTATTCACAACCTTGACTATCTT TTGACCGTCTCATTGCGTGCATTTACTGCAACAGCCTTGGAAATCCTGGCTGGCCTGGAAACTCTGTTGGATCAAAGGTCATCTGAGCAATGGAGTTACC GCAGGCTTCCAACTCCAACAGCTACATTCCCTGCCGTTCTGAATAGTGAAGAGGATGCTAGTGATAGCGAGGTCTCCAGAACCCGTGATAACCACAACAA TAAATATGTTCCCTGGGTACAAGGAACAGACCGTAGACAAGACTCGTTTTTTCATCCTGTGGATGAGGCCGATCAAGAACAGCTGAAACAAGTTCGTGCT TTGCGAAAGAAGTTGCAGCAGATTGAGATGCTCGAGGAAAAGCAACTCAATGGCTATCAGCTCGATAGCCAGCAAACTGCTAAACTTCAAACGAAGTTGG AAATCGAGAGTTTACTGTCTGAGCTTGGTGTCCCAGTCGAGACAGCGAAAGCCAAATCTTCTGCTTCAACTTCCTCTGAAATGAGGGGTAATAACAAAAG GCCAAAGGCATCAAGAAAGCAGAAGAGAAACAGCAAGATCAAGGATGAGGAACCTGAATTGCCTTCTGGTTTTGTTGGAAATAAGCTAGAGGTAGACACT GTAAAACAATTCCCGGATGCTGCTGACATCTCTCCGCTCTCCACTAATAAGGTGGAAGATGATGCAGTGCAGTCCAAGTGCTCTACCGACAATCATGGTG TAATTGTTAAGGGCTTTCCAGACTTGGCAGTGAAAAATAAGAGATCATCTCCTCCAGCAAGCAAGAAGAAGAACAGGAAAGGAGGTCTTCCCATGTTTTT GAGTGGCGCACTTGATGATTCTTCAAAAGAGGAGGTTGCTCCTCCCCCTCCGCCGACCCCTAAACACGAGGGCCCAGCTTGGGGCGGGGCCAAAATATCA AAGGATCGTGCTTCGCTTCGCTTGATTCTGGACGAGCAGAGCAAAACTGGCGGCAACCCAAAGAACATCATTACTCCTCCGGTCGATGAGCAGCCGCCTG CCAGTAGGGGTGATGGGAAGGTGTGTCTAAGCTCATTCATTTCTTCCAAACCTATAGCTGTAGCTTGCACATCTCATGCTACTGATGCCGAGAAGGGGAC TCCTCCGTGGGTTTCTGGGACTTCTCCTCTTACGTCTCGTCCTTCTCTACGAGACATCCAGATGCAACAGGGAAAACATCATCAGGGACTTTGCCACAGT CCAAAGACGAGAACGGCTGGATTTACGATCACGACAGGGCAGGGGTCCCCTTCGGATTCTCCAGCCACAAACAAGTGGTTTAAGCCAGAGATTGATGCAC CATCGTCGATCCGGTCGATCCAGATTGAGGAGAAGGCAATGAAGGACCTGAAGCGATTCTATAGCAGTGTGAAGATAGTGAGGAACGCTGCTTGA
AA sequence Show only first row Show all	>Lus10013648 pacid=23171601 polypeptide=Lus10013648 locus=Lus10013648.g ID=Lus10013648.BGIv1.0 annot-version=v1.0 MQVTSRKLSPSSSRKDLWLTVREGSLADVDSILALLKKNGANINSRNSMGLTPLHIATWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVA SVLLQSGASISLEDSKFCTPVDLLSGPVAQVLGDGSDSATEVLSWGSGANYQLGTGNSDLQKLPCKVDTLHGSLTRLVSAAKFHSAAVSAHGEVYTWGFG RGGRLGHPDFDIHSGQAAVITPRQVTSGIGSRHVRAIAAAKHHTVLATEGGEVFTWGSNREGQLGYTVDTQPTPRRVSFIKSKIVAVAAANKHSAVVSDS GEVYTWGCNSDGQLGYGTSNSASNYTPRVVESLKGKVFTGVAAAKSHTVALRSDGEVYTWGHRLVTPRRVIVSRNLKKSGGTPLKFHRMERLHAVAIAAG MVHSLALMDDGALFYWASADPDLKCQQLHTLCGRSIVSVSAGKYWGAVVTDTGDVYTWDSKQDRNKSPVPTRLHGVKRATSVVVGETHLLVVSSLYHPPI SPNAAEINHRQKLQDKSDMEDLEDFLFDRTESKDELYVEDDKNTGQRSVPSLKSLCEKSAADNLVETRNAVQMLEIADTLEADNLKKHCEDIVIHNLDYL LTVSLRAFTATALEILAGLETLLDQRSSEQWSYRRLPTPTATFPAVLNSEEDASDSEVSRTRDNHNNKYVPWVQGTDRRQDSFFHPVDEADQEQLKQVRA LRKKLQQIEMLEEKQLNGYQLDSQQTAKLQTKLEIESLLSELGVPVETAKAKSSASTSSEMRGNNKRPKASRKQKRNSKIKDEEPELPSGFVGNKLEVDT VKQFPDAADISPLSTNKVEDDAVQSKCSTDNHGVIVKGFPDLAVKNKRSSPPASKKKNRKGGLPMFLSGALDDSSKEEVAPPPPPTPKHEGPAWGGAKIS KDRASLRLILDEQSKTGGNPKNIITPPVDEQPPASRGDGKVCLSSFISSKPIAVACTSHATDAEKGTPPWVSGTSPLTSRPSLRDIQMQQGKHHQGLCHS PKTRTAGFTITTGQGSPSDSPATNKWFKPEIDAPSSIRSIQIEEKAMKDLKRFYSSVKIVRNAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	0	1
AT3G03790			ankyrin repeat family protein ...		Lus10010659 [exp]	1.0	0.9364
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10038106 [exp]	1.4	0.9355
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	3.0	0.9008
AT2G03140			alpha/beta-Hydrolases superfam...		Lus10033426 [exp]	3.5	0.8704
AT1G69360			Plant protein of unknown funct...		Lus10037122 [exp]	5.8	0.8612
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	5.9	0.8834
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	6.3	0.8956
AT1G48840			Plant protein of unknown funct...		Lus10026581 [exp]	6.5	0.8385
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	7.4	0.8940
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10021329 [exp]	8.4	0.8754

Compare expression of checked genes

Lus10013648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.