Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G32450 331 / 2e-112 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G16840 198 / 2e-60 BPA1 binding partner of acd11 1 (.1.2.3) AT4G17720 197 / 1e-59 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G46870 195 / 5e-59 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G67950 152 / 9e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G14340 132 / 1e-35 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 103 / 5e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G52280 55 / 9e-08 Myosin heavy chain-related protein (.1) AT2G16940 45 / 0.0001 Splicing factor, CC1-like (.1.2.3) AT5G09880 43 / 0.0004 Splicing factor, CC1-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010660 [exp] 493 / 4e-175 AT5G32450 352 / 3e-122 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040095 [exp] 196 / 4e-59 AT4G17720 379 / 8e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030952 [exp] 192 / 2e-57 AT4G17720 382 / 7e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011063 [exp] 176 / 2e-51 AT4G17720 333 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025743 [exp] 165 / 2e-47 AT4G17720 295 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000676 [exp] 161 / 7e-46 AT4G17720 313 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10035919 [exp] 138 / 1e-37 AT4G17720 226 / 3e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030491 [exp] 134 / 2e-36 AT1G14340 300 / 1e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012843 [exp] 133 / 5e-36 AT1G14340 301 / 5e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G037600 [exp] 367 / 2e-126 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G055100 [exp] 363 / 5e-125 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G138400 [exp] 204 / 2e-62 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G095400 [exp] 191 / 1e-57 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G103600 [exp] 182 / 1e-53 AT1G67950 280 / 6e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.017G081500 [exp] 128 / 3e-34 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081400 [exp] 126 / 2e-33 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G143800 [exp] 57 / 2e-08 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 56 / 3e-08 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.001G070200 [exp] 51 / 3e-07 AT5G32450 65 / 8e-13 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10013651 pacid=23171621 polypeptide=Lus10013651 locus=Lus10013651.g ID=Lus10013651.BGIv1.0 annot-version=v1.0 ATGCACCAGTGCACCCCCAACGTGACGTATACTTGTCACGCTGCGAGGCGACAACGGACTGCAGCAGGCAGTACGTTGTGTGGATCTCCTCCTCCTACCA CGACGCTCGAGAATGTCACCCAGGAGAATCCCGAAGGTCATTTGTGTAACCCAGGCTTAGATGAGCAGTTAAAAAACTCATGGTCGCTTCACATTGGATC GGCCAAGAAAGATTACCTTGCGGAATCTTCAATAGATTTTGCAGAGGAGATTGAGCCAGTGACCATCTCTCTGCCACTGAAGTTCGCGAATTCCGGTGCA GTTTTAGATGAGATAGACGATTATGAGAAATACGACAGCTACATAACATCTACAGACAACCTCAGGTCACTTGCGAGACAAAATGCGATGCTTCAGAGGG AAGATAGCGATGTTCCATCGGCAATAAAAAAATCACCAACACCGAAGATTTGGAACAGAATGGTCAACGGGGTCAGGCTCATATGGAAGTCTGGTCGATT CAGCAAACAGCCCTGGAGAGAATGTTCCAAGACGACTACAAGAACGGTTCAGGTGAAGCAGCTTTCAGATCTAGCTGGAGAGAGAGAGATTCACGAGTTC TTCTCCTTCTCCGGCGAAATCGAGCACATTCAAATCCACCGTGACAATGGGAAGTCAGCATTCGTCACATTCAAAGATGCCAAAGCGCTTGAAATTGCTT TGCTATTATCGGGGGCTACTATTGTGGACCAAATAGTGACAATTTCTCCTGCTGTAGACTATGCGCCAAATCGTGAGCATCAGGAAGTTAGCGTGGTAGA GAATGCTGTCTCTGTTAGTCCTGCAGACCATCCAACATCTCATTGTGAGGAAAAAGCTAGTCCACCACGGGGAAAAGTGTATGTCAACAAAGCACAAGTA GTGGTTACAAACATGTTAGCTAAAGGGTCAGCTATGAGTCAAGATGCAATGAATAAAGCAAAGGCATTTGATGAGAAGCATCGGTTGACTGCCAGTGCGT CTGCCAAGGTCAGCTCCTTTGATCGGAGAGTTAAGCTGAAAGAGAAATTCACTGTAGGAATTTCAGCTGTTAATGAGAAAGTGAAGCTAGTTGATCAAAA GCTTCAAGTATCGGATAGAACAATGGCAGCAATTTTTGCAGCAGAAACAAAGATAAACAACACAGGATCAGCTGTCAAGTCAAGCAGGTATGTGACAGTT GGGTCAGCTTGGCTAAATGGTGCTTTCAGTAAGGTGGCAAAGGCGGGGCAGGTTGCTGGGGTTAAAACCAGGGAAAAGTTTAATACTGCTGTTTCAAACT TGTCTGCTAAGGTAAGGGGACAATTCAATAAGATGGTGGTTGATTGTTAA
AA sequence Show only first row Show all	>Lus10013651 pacid=23171621 polypeptide=Lus10013651 locus=Lus10013651.g ID=Lus10013651.BGIv1.0 annot-version=v1.0 MHQCTPNVTYTCHAARRQRTAAGSTLCGSPPPTTTLENVTQENPEGHLCNPGLDEQLKNSWSLHIGSAKKDYLAESSIDFAEEIEPVTISLPLKFANSGA VLDEIDDYEKYDSYITSTDNLRSLARQNAMLQREDSDVPSAIKKSPTPKIWNRMVNGVRLIWKSGRFSKQPWRECSKTTTRTVQVKQLSDLAGEREIHEF FSFSGEIEHIQIHRDNGKSAFVTFKDAKALEIALLLSGATIVDQIVTISPAVDYAPNREHQEVSVVENAVSVSPADHPTSHCEEKASPPRGKVYVNKAQV VVTNMLAKGSAMSQDAMNKAKAFDEKHRLTASASAKVSSFDRRVKLKEKFTVGISAVNEKVKLVDQKLQVSDRTMAAIFAAETKINNTGSAVKSSRYVTV GSAWLNGAFSKVAKAGQVAGVKTREKFNTAVSNLSAKVRGQFNKMVVDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10013651 [exp]	0	1
AT5G38700			unknown protein		Lus10025041 [exp]	2.0	0.7924
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10036768 [exp]	7.7	0.7377
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10040795 [exp]	8.3	0.7873
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10010655 [exp]	9.5	0.7936
AT4G01897			unknown protein		Lus10038061 [exp]	12.4	0.7534
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10024908 [exp]	13.0	0.7228
AT5G53310			myosin heavy chain-related (.1...		Lus10039322 [exp]	13.8	0.7423
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001927 [exp]	14.3	0.7535
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	16.4	0.7593
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021562 [exp]	18.0	0.6914

Compare expression of checked genes

Lus10013651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.