Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22360 359 / 6e-121 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 355 / 2e-119 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 347 / 6e-116 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 343 / 1e-114 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22380 338 / 2e-112 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G78270 314 / 2e-103 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT2G28080 146 / 4e-39 UDP-Glycosyltransferase superfamily protein (.1) AT5G05870 139 / 1e-36 UGT76C1 UDP-glucosyl transferase 76C1 (.1) AT3G11340 135 / 3e-35 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G46670 135 / 3e-35 UGT76E11 UDP-glucosyl transferase 76E11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010665 [exp] 712 / 0 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10017542 [exp] 534 / 0 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10007421 [exp] 511 / 2e-180 AT1G22400 529 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10019364 [exp] 504 / 1e-177 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10031388 [exp] 380 / 5e-129 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 352 / 3e-118 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 350 / 3e-117 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10025741 [exp] 335 / 1e-111 AT1G22380 525 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032218 [exp] 334 / 4e-111 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G021000 [exp] 400 / 4e-137 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G020900 [exp] 394 / 2e-134 AT1G22380 538 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.006G022500 [exp] 392 / 5e-134 AT1G22400 514 / 3e-180 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G023101 [exp] 392 / 8e-134 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022600 [exp] 389 / 9e-133 AT1G22400 515 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.002G098400 [exp] 389 / 1e-132 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022300 [exp] 388 / 2e-132 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G020500 [exp] 387 / 4e-132 AT1G22380 527 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.016G021300 [exp] 383 / 2e-130 AT1G22400 522 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G023151 [exp] 381 / 2e-129 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013652 pacid=23171623 polypeptide=Lus10013652 locus=Lus10013652.g ID=Lus10013652.BGIv1.0 annot-version=v1.0 ATGAGCTCCACGGATTCAGCGTCGCCGGCGGCCCCTCATGCTGTCTGCGTTCCGTATCCGGCTCAATCCCACATCAAGGCCACCCTTAAATGTGCCAAGT TACTCCACAGCAGGGGATTCCACATCACTTTCGTCAACACCGAGTTCAACCACACCCGATTTCTCAATTCCAGAGGCCCTCATGCCCTCGACGGCCTACC GGATTTCCGATTCGCCACCATCCCCGACGGGATTCCTCATTCAGACCCTGGAGCAACACAGGACGTACCTGCTATGTGCGACTCGGTCATGAATTTCATG ATGACACCGTTCAGGGAACTTGTCAGGAAATTGAACGACCCCGAGCTCATGTCGGAGAGCGGCTGGCCGCCGGTGAGCTGCGTAGTTGCGGACGGGATGA TGGTGTTTGCTTTAGAAGTGGCGAGAGAGATTGGAGTGCCGTCGTTAAGCTATTGGACTTTTGCAGCTTGTGGTTTCATGGGATTCAAGCAGTACCGCCC TCTCGTTGACCAAGGCGTCACTCCCTTCAAAGACGATAGCTATTTGACAAACGGATTCCTGGACAAAGCCGTAGAAGTTCCAGGAATGAAGAACATGCGC TACAGAGACCTGCCGACTTTCATCCAAACTACCGATCCAAAAGAACCAATTTTCCACAACCTAATGCTAGGCGCCGAGGCAGTCCCAGTCGCCTCCGCTC TCCTCCTCCACACATTTGACGCCCTCGAAGTAGACGTCCTCGCCGCCCTCAACACAATCTACCCAGACCGCGTCTACACCGCCGGTCCAATGCAGCTCCT CCTCAATCAAGCCAAACACACCTCCGACCTCGATTCAATCAGCTACAGCCTTTGGGAGGAAGACTCAAAGTGTCTCCGCTGGCTCGATTCCAAACCGGCA AATTCCGTCCTCTATGTCAATTTCGGAAGCGTCATGACCATGTCCAAGCACCACCTGATCGAATTCGCTATGGGTTTTGTCAACAGCGATGTTTCCTTCC TGTGGGTCATCCGGCCTGACCTGGTTATCGGAGAATCAGCGGCTCTACCGCCCGCATTCCCCGAGGCCGCCGGAATTCCAGGAGAAGGCGGACAAAATTG GGTTGATCTCCGGGTGGTGCCCGCAGGAGGAGGTGCTGAACCATCCGGCGGTGGGTGGGTTTTTGACACACTGCGGGTGGGGTTCGACGATTGA
AA sequence Show only first row Show all	>Lus10013652 pacid=23171623 polypeptide=Lus10013652 locus=Lus10013652.g ID=Lus10013652.BGIv1.0 annot-version=v1.0 MSSTDSASPAAPHAVCVPYPAQSHIKATLKCAKLLHSRGFHITFVNTEFNHTRFLNSRGPHALDGLPDFRFATIPDGIPHSDPGATQDVPAMCDSVMNFM MTPFRELVRKLNDPELMSESGWPPVSCVVADGMMVFALEVAREIGVPSLSYWTFAACGFMGFKQYRPLVDQGVTPFKDDSYLTNGFLDKAVEVPGMKNMR YRDLPTFIQTTDPKEPIFHNLMLGAEAVPVASALLLHTFDALEVDVLAALNTIYPDRVYTAGPMQLLLNQAKHTSDLDSISYSLWEEDSKCLRWLDSKPA NSVLYVNFGSVMTMSKHHLIEFAMGFVNSDVSFLWVIRPDLVIGESAALPPAFPEAAGIPGEGGQNWVDLRVVPAGGGAEPSGGGWVFDTLRVGFDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10013652 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10013653 [exp]	1.0	0.8096
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	4.5	0.7412
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	4.6	0.7410
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10031620 [exp]	22.8	0.7070
AT1G65030			Transducin/WD40 repeat-like su...		Lus10025803 [exp]	30.3	0.7133
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	35.7	0.6700
AT5G64950			Mitochondrial transcription te...		Lus10028912 [exp]	36.7	0.7064
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026141 [exp]	44.3	0.6335
AT5G24650			Mitochondrial import inner mem...		Lus10005289 [exp]	57.8	0.6811
AT1G14060			GCK domain-containing protein ...		Lus10037148 [exp]	59.2	0.6597

Compare expression of checked genes

Lus10013652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.