Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54400 72 / 3e-16 HSP20-like chaperones superfamily protein (.1) AT2G27140 52 / 2e-08 HSP20-like chaperones superfamily protein (.1) AT1G53540 49 / 9e-08 HSP20-like chaperones superfamily protein (.1) AT1G07400 49 / 1e-07 HSP20-like chaperones superfamily protein (.1) AT1G59860 48 / 3e-07 HSP20-like chaperones superfamily protein (.1) AT5G04890 40 / 0.0003 RTM2 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032902 [exp] 68 / 3e-14 AT1G54400 89 / 4e-22 HSP20-like chaperones superfamily protein (.1) Lus10008426 [exp] 57 / 7e-10 AT2G27140 111 / 7e-29 HSP20-like chaperones superfamily protein (.1) Lus10028874 [exp] 46 / 3e-06 AT5G04890 103 / 4e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 45 / 4e-06 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 45 / 6e-06 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10003356 [exp] 45 / 9e-06 AT2G27140 103 / 3e-26 HSP20-like chaperones superfamily protein (.1) Lus10008946 [exp] 42 / 6e-05 AT5G04890 102 / 3e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10024258 [exp] 39 / 0.0004 AT5G04890 61 / 2e-11 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G054800 [exp] 81 / 1e-19 AT1G54400 98 / 6e-26 HSP20-like chaperones superfamily protein (.1) Potri.013G054900 [exp] 79 / 2e-18 AT1G54400 97 / 3e-25 HSP20-like chaperones superfamily protein (.1) Potri.013G054700 [exp] 77 / 4e-18 AT1G54400 93 / 3e-24 HSP20-like chaperones superfamily protein (.1) Potri.019G037700 [exp] 63 / 7e-13 AT1G54400 93 / 5e-24 HSP20-like chaperones superfamily protein (.1) Potri.004G191101 [exp] 52 / 2e-08 AT2G27140 109 / 2e-28 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 51 / 2e-08 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.004G191200 [exp] 52 / 3e-08 AT2G27140 106 / 3e-27 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 50 / 6e-08 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.017G130700 [exp] 49 / 8e-08 AT5G37670 160 / 1e-51 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 48 / 3e-07 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10013655 pacid=23171569 polypeptide=Lus10013655 locus=Lus10013655.g ID=Lus10013655.BGIv1.0 annot-version=v1.0 ATGGTGATCCAAGAACACGCCAATGACTTTAAGCCCCTCTGCACTTGGGAATCCACAGAATCCCATCACATACTTCACCTCCATCTACATGGTTTTCGAA AAGAGCAAATGAGAGTCCGACTAAAGAGCAGTGGAATTTTGACAATTACTGGAGAGTCTGAGGATGAACATACAGTAAAAACCATCCACCGGAAGTTCCG CAAGGAAATTCATGTTTCCAAGTCGGCGTGCAAATCTCCAAACCAAATCCGCGCCAAGTTTGCAGGTGGAGTGCTGACCCTGACGCTGCCACTAATAGCC AATCCTCATGATCTTGAAATCGCACCGTCATTTTGTTCCACAAAGGTTGCCGCTTCTTTCTTGCAGCTGCGGGTTTGGTTTGACGACTTATCTAAATCCT CCAAGATCTGTCTTCTTCTGATCGTTGTGGCATTGCTGGTTGGGCTAATTGCTGCATTGAGTCTCTCTTTTTGGAACAACCACCCAGCCTGA
AA sequence Show only first row Show all	>Lus10013655 pacid=23171569 polypeptide=Lus10013655 locus=Lus10013655.g ID=Lus10013655.BGIv1.0 annot-version=v1.0 MVIQEHANDFKPLCTWESTESHHILHLHLHGFRKEQMRVRLKSSGILTITGESEDEHTVKTIHRKFRKEIHVSKSACKSPNQIRAKFAGGVLTLTLPLIA NPHDLEIAPSFCSTKVAASFLQLRVWFDDLSKSSKICLLLIVVALLVGLIAALSLSFWNNHPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54400			HSP20-like chaperones superfam...		Lus10013655 [exp]	0	1
AT2G20362			unknown protein		Lus10024963 [exp]	1.4	0.9661
					Lus10035810 [exp]	4.1	0.9179
AT4G37445			unknown protein		Lus10001408 [exp]	4.9	0.9632
AT1G76770			HSP20-like chaperones superfam...		Lus10028577 [exp]	6.0	0.9505
					Lus10035158 [exp]	7.3	0.9285
AT1G47271			Cystathionine beta-synthase (C...		Lus10001964 [exp]	8.5	0.9411
AT1G31500			DNAse I-like superfamily prote...		Lus10026203 [exp]	8.7	0.8681
AT3G48660			Protein of unknown function (D...		Lus10032028 [exp]	8.7	0.8670
AT4G16400			unknown protein		Lus10038791 [exp]	10.7	0.9443
					Lus10002859 [exp]	11.1	0.9455

Compare expression of checked genes

Lus10013655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.