Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10390 265 / 7e-87 Protein kinase superfamily protein (.1) AT1G33260 260 / 5e-85 Protein kinase superfamily protein (.1.2) AT3G19300 162 / 7e-45 Protein kinase superfamily protein (.1) AT2G29000 158 / 7e-43 Leucine-rich repeat protein kinase family protein (.1) AT5G15730 152 / 2e-42 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT1G51880 156 / 4e-42 RHS6 root hair specific 6 (.1) AT5G54590 151 / 4e-42 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT4G20450 154 / 2e-41 Leucine-rich repeat protein kinase family protein (.1) AT1G51870 154 / 2e-41 protein kinase family protein (.1) AT1G49100 154 / 2e-41 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016382 [exp] 365 / 7e-126 AT1G33260 280 / 2e-92 Protein kinase superfamily protein (.1.2) Lus10019741 [exp] 350 / 7e-120 AT1G33260 274 / 6e-90 Protein kinase superfamily protein (.1.2) Lus10043083 [exp] 157 / 2e-44 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10032672 [exp] 153 / 1e-42 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10014071 [exp] 154 / 7e-42 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10019844 [exp] 154 / 9e-42 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10016620 [exp] 151 / 4e-40 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10038174 [exp] 146 / 5e-39 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025103 [exp] 143 / 3e-38 AT2G16750 238 / 7e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147100 [exp] 310 / 4e-104 AT4G10390 325 / 5e-110 Protein kinase superfamily protein (.1) Potri.001G454800 [exp] 309 / 1e-102 AT1G33260 323 / 5e-108 Protein kinase superfamily protein (.1.2) Potri.001G415300 [exp] 163 / 2e-46 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.019G094200 [exp] 163 / 4e-46 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.009G100400 [exp] 165 / 1e-45 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.004G140301 [exp] 163 / 5e-45 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.011G131200 [exp] 155 / 1e-43 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.019G094700 [exp] 160 / 2e-43 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094600 [exp] 159 / 2e-43 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 157 / 2e-42 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013656 pacid=23171618 polypeptide=Lus10013656 locus=Lus10013656.g ID=Lus10013656.BGIv1.0 annot-version=v1.0 ATGGCGTTTGGCTGTATACCCAATTTCCTCATCATCCGCCGCCGCCGCCGAATTCCCACTAGGGATCAGGTCGCCGCTTTTTCCGATGACTGCGGTTCTG TCTCTGTTAAGCCGGCCGACGGCGTTTCTCCGGATTTCTACAATTGGGAGCAGATTCAGAAATTGACCCACAATTTCGCTTGTTTAATCGGGTCTGGAGG GTTCAGCAATGTCTATCTGGCGAATTTCTCCGGAGGCGGTAGCACTGCTGCAGCTGTGAAGGTCAGCTACTCCGGCGACTATCTCAGCCCGCTGTTCAAT CAGGAGCTCGACATTATGATCCGCCTTCGCCACCGCAACATTGTCAAGCTCTTAGGCTACTCTTCCGATCAGGGAGGCGCACTGGTAATGGAGTATGTAC CCAATGGAACCTTACAAGACAATCTACACGGAGGTGGAGGAAGAGGATTGCTTTCGTGGGGGAAAAGGATGGCAATAGCCTACCAACTCGCCCAAGCAAT CGAGTACCTCCACGAGAAATGCGACCTCCCAATTGTCCACAGCGACATCAAAAGTTCAAACCTTTTGCTAGACGCCAACCTCCACTGCAAGCTCTGCGAT TTCGGGTCTGCCAAAATGGGGTTCTCTTCCGCTGTGGCGATGCAAGGTCCATCGCGACGGCGGAGGTTTCTGATGACAGGTTCGCCGGGATACACTGACC CGCATTACTTAAGGACTGGGCTACCGTCCAAGAAGAATGACATCTACAGTTATGGCGTGATACTGTTGGAGTTGGTAACGGGTAGGGAGGCGTTTTCGGA GAAGGGGGAGATGCTTGCGGCGTCGATCATGGGTCCGATAATGGTGGATGGGAGATTGGGAGGTGAGTTTGAGATGGAGGAAGCAAAGGCCATGTTCTGC CTTGCTGGGAAATGCATTGATATGTCTCCAACTGTGAGGCCTAATGCTACGCAAATACTGGAGATTATCAAAGAGAATGTCAAAGGATTAGAGGACAAGT TATATGATGATAAAAAATACTAA
AA sequence Show only first row Show all	>Lus10013656 pacid=23171618 polypeptide=Lus10013656 locus=Lus10013656.g ID=Lus10013656.BGIv1.0 annot-version=v1.0 MAFGCIPNFLIIRRRRRIPTRDQVAAFSDDCGSVSVKPADGVSPDFYNWEQIQKLTHNFACLIGSGGFSNVYLANFSGGGSTAAAVKVSYSGDYLSPLFN QELDIMIRLRHRNIVKLLGYSSDQGGALVMEYVPNGTLQDNLHGGGGRGLLSWGKRMAIAYQLAQAIEYLHEKCDLPIVHSDIKSSNLLLDANLHCKLCD FGSAKMGFSSAVAMQGPSRRRRFLMTGSPGYTDPHYLRTGLPSKKNDIYSYGVILLELVTGREAFSEKGEMLAASIMGPIMVDGRLGGEFEMEEAKAMFC LAGKCIDMSPTVRPNATQILEIIKENVKGLEDKLYDDKKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10390			Protein kinase superfamily pro...		Lus10013656 [exp]	0	1
AT3G07870			F-box and associated interacti...		Lus10038606 [exp]	1.4	0.9377
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	2.0	0.9323
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	3.0	0.9242
AT1G27100			Actin cross-linking protein (....		Lus10037230 [exp]	3.9	0.9150
AT1G59710			Protein of unknown function (D...		Lus10036694 [exp]	4.2	0.9138
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	6.6	0.9197
AT5G56460			Protein kinase superfamily pro...		Lus10013406 [exp]	6.8	0.8845
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	7.0	0.9122
AT3G11320			Nucleotide-sugar transporter f...		Lus10040234 [exp]	8.1	0.8535
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	8.5	0.8933

Compare expression of checked genes

Lus10013656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.