Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17486 243 / 2e-81 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 224 / 1e-73 PPPDE putative thiol peptidase family protein (.1) AT1G47740 216 / 3e-70 PPPDE putative thiol peptidase family protein (.1.2) AT5G25170 204 / 3e-66 PPPDE putative thiol peptidase family protein (.1) AT2G25190 195 / 1e-62 PPPDE putative thiol peptidase family protein (.1) AT1G80690 190 / 9e-61 PPPDE putative thiol peptidase family protein (.1) AT4G31980 196 / 1e-58 unknown protein AT4G25680 84 / 2e-19 PPPDE putative thiol peptidase family protein (.1) AT4G25660 82 / 2e-18 PPPDE putative thiol peptidase family protein (.1) AT3G07090 68 / 2e-13 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033030 [exp] 436 / 2e-157 AT4G17486 225 / 3e-74 PPPDE putative thiol peptidase family protein (.1.2) Lus10043293 [exp] 357 / 2e-126 AT4G17486 243 / 3e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10019437 [exp] 350 / 2e-123 AT4G17486 241 / 1e-80 PPPDE putative thiol peptidase family protein (.1.2) Lus10040170 [exp] 241 / 8e-81 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10004755 [exp] 227 / 3e-75 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10007844 [exp] 223 / 2e-73 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2) Lus10032708 [exp] 212 / 7e-69 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10004372 [exp] 219 / 9e-69 AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1) Lus10003951 [exp] 210 / 2e-68 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070600 [exp] 334 / 1e-117 AT4G17486 235 / 1e-78 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G154400 [exp] 325 / 6e-114 AT4G17486 220 / 8e-73 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G080300 [exp] 253 / 1e-85 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 252 / 4e-85 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.002G134200 [exp] 216 / 1e-70 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 213 / 2e-69 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.018G021700 [exp] 212 / 2e-69 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.014G042300 [exp] 212 / 5e-69 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 209 / 4e-68 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 208 / 1e-67 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10013657 pacid=23171606 polypeptide=Lus10013657 locus=Lus10013657.g ID=Lus10013657.BGIv1.0 annot-version=v1.0 ATGGAGGTTGGAATCGCCTCGGTGAATACGAGCTCCGGGAAGGAGAATTTGAACGATAGCGGTGGAACCCTTGTGGTTCTGAATGTCTACGATCTCACCC CTGTCAACAATTATGCTTATTGGTTCGGTTTCGGAATCTTCCATTCTGGCATTGAAGTTCATGGCAAGGAGTATGGATTTGGAGCTCATGATTTCCCAGT TAGTGGAGTTTTTGAAGTTGAGCCAAGAAACTGCCCAGGTTTCATTTACAGAAGTTCCATCCCACTGGGCCACATAACGATGCCTCCTACCGAGTTCAGG ACGTTTATAGAGAGCATGGCTTCTGAGTATCATGGAGATACTTACCACCTTATCTCCAAGAACTGCAACCATTTTACCGATGACGTATGCTCCAGGCTGA CTGGAAAGAAAATACCAGGATTCGTGAATCGGCTTGCCCGGCTAGGAGCTCTGTGCAGTTGTTTGCTTCCTGAAAGCCTTCAAGTGACTACAGTGAAACA GCTGCCTGAACACCATGACTTGTTGGAAGAAGATGGAAGCAACTCGCAGACATCAGCCACCTTAACCAATGACTCAACGGAAATCGAAGATATAGAACAA GAGAGGCACCTGCTGTCACCAAGCCGTGGAGCGGGAGAAGTGTCATTTGTGAAAGAAAGAAGTCCAACGGAAGATAAGCTACTTCATTGA
AA sequence Show only first row Show all	>Lus10013657 pacid=23171606 polypeptide=Lus10013657 locus=Lus10013657.g ID=Lus10013657.BGIv1.0 annot-version=v1.0 MEVGIASVNTSSGKENLNDSGGTLVVLNVYDLTPVNNYAYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRNCPGFIYRSSIPLGHITMPPTEFR TFIESMASEYHGDTYHLISKNCNHFTDDVCSRLTGKKIPGFVNRLARLGALCSCLLPESLQVTTVKQLPEHHDLLEEDGSNSQTSATLTNDSTEIEDIEQ ERHLLSPSRGAGEVSFVKERSPTEDKLLH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	0	1
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10018986 [exp]	1.4	0.9358
AT1G67550		URE	urease (.1)		Lus10015814 [exp]	2.0	0.9351
AT4G32140			EamA-like transporter family (...		Lus10006194 [exp]	3.9	0.9324
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	4.0	0.9312
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10010324 [exp]	6.9	0.9093
					Lus10025502 [exp]	7.0	0.9282
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	7.3	0.9154
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	8.1	0.9287
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10024423 [exp]	8.3	0.9093
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	8.4	0.9238

Compare expression of checked genes

Lus10013657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.