Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20050 244 / 6e-79 Protein kinase superfamily protein (.1) AT4G32300 204 / 7e-61 SD2-5 S-domain-2 5 (.1) AT1G34300 181 / 3e-52 lectin protein kinase family protein (.1) AT5G24080 176 / 3e-52 Protein kinase superfamily protein (.1) AT2G19130 178 / 3e-51 S-locus lectin protein kinase family protein (.1) AT4G00340 175 / 3e-50 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 165 / 2e-46 S-locus lectin protein kinase family protein (.1) AT5G38250 153 / 6e-43 Protein kinase family protein (.1) AT5G39020 153 / 2e-42 Malectin/receptor-like protein kinase family protein (.1) AT1G66920 150 / 1e-41 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033032 [exp] 459 / 3e-163 AT5G20050 483 / 4e-169 Protein kinase superfamily protein (.1) Lus10002917 [exp] 195 / 3e-57 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 192 / 3e-56 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10028711 [exp] 184 / 2e-54 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 180 / 6e-52 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10006052 [exp] 179 / 2e-51 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10033748 [exp] 177 / 5e-51 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10043391 [exp] 176 / 1e-50 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10039732 [exp] 172 / 5e-49 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070800 [exp] 329 / 4e-112 AT5G20050 516 / 0.0 Protein kinase superfamily protein (.1) Potri.013G115700 [exp] 188 / 9e-55 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 186 / 3e-54 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.018G027300 [exp] 185 / 7e-54 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.006G254600 [exp] 185 / 8e-54 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.019G086200 [exp] 184 / 2e-53 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 184 / 3e-53 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 183 / 4e-53 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.014G086900 [exp] 183 / 5e-53 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.019G086400 [exp] 181 / 4e-52 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013659 pacid=23171612 polypeptide=Lus10013659 locus=Lus10013659.g ID=Lus10013659.BGIv1.0 annot-version=v1.0 ATGGATGTGGCGAAAGCGTTGTGTTACCTTCATCACGACTGCCGGTCCAGGATTCTTCATCTGGACGTGAAGCCTGAAAACATCTTGCTGGACGAGAATC ACCGAGCGATCGTCTCTGATTTTGGGCTGTCGAAGCTGATGAGGAGAGACGAGAGTAAAGTAATCACCAACATAAGAGGGACGAGGGGGTACTTGGCTCC GGAATGGCTGTTGGAGCTAGGGATTTCGGAGAAATCGGACGTGTACAGCTACGGGATGGTGGTGCTGGAGATGATCGGAGGGAGGCGAAACGTGCGCCGG AGCACGAAATCGGGGAGGAGGAAGTGGGATTACTTTCCCAGGACTGTGGAGAAGACGTTGAGGGAAGGAGGGAATTTGATGGAGGTAGTGGATCGGAGGC TGGTGGAAAGCGGAGGAATCGATGAGAGGGAGCTGAGGCGATTGGTTAATGTGGCGTTTTGGTGTATTCAGGAAGTGGCCCAGTTGAGACCTGCTATGGG AAGGGTGGTGGAGATGCTAGAAGGGAGAGTAGCGGTGGATCAGCCACCGGACACGAAGATGATGGTGGTTGATATGTTGTCGATTGACGAAGAGTCGGTG GGAGATGAGATTAATCATAGGAGGTTGGTGGCGATTCCGGTAGGGCAAGGAGATGTAGATGATAGCACTTCTGCTGCCGCTGCCGCCGCCGCCGGGATGT CGGGTTCATTCACCATGTCGGTAATCTCTGCGCGATAG
AA sequence Show only first row Show all	>Lus10013659 pacid=23171612 polypeptide=Lus10013659 locus=Lus10013659.g ID=Lus10013659.BGIv1.0 annot-version=v1.0 MDVAKALCYLHHDCRSRILHLDVKPENILLDENHRAIVSDFGLSKLMRRDESKVITNIRGTRGYLAPEWLLELGISEKSDVYSYGMVVLEMIGGRRNVRR STKSGRRKWDYFPRTVEKTLREGGNLMEVVDRRLVESGGIDERELRRLVNVAFWCIQEVAQLRPAMGRVVEMLEGRVAVDQPPDTKMMVVDMLSIDEESV GDEINHRRLVAIPVGQGDVDDSTSAAAAAAAGMSGSFTMSVISAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20050			Protein kinase superfamily pro...		Lus10013659 [exp]	0	1
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10029373 [exp]	3.6	0.8093
AT5G20050			Protein kinase superfamily pro...		Lus10013660 [exp]	10.4	0.7217
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10015297 [exp]	32.0	0.7654
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10039290 [exp]	91.7	0.7406
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10005088 [exp]	167.6	0.7197
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10000519 [exp]	181.2	0.7207
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10022776 [exp]	186.5	0.7162
AT1G56130			Leucine-rich repeat transmembr...		Lus10031199 [exp]	190.2	0.6999

Compare expression of checked genes

Lus10013659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.