Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20050 141 / 8e-41 Protein kinase superfamily protein (.1) AT5G35370 45 / 4e-06 S-locus lectin protein kinase family protein (.1) AT4G32300 44 / 1e-05 SD2-5 S-domain-2 5 (.1) AT5G48740 43 / 3e-05 Leucine-rich repeat protein kinase family protein (.1) AT1G34300 42 / 9e-05 lectin protein kinase family protein (.1) AT3G53590 40 / 0.0002 Leucine-rich repeat protein kinase family protein (.1) AT1G63430 39 / 0.0005 Leucine-rich repeat protein kinase family protein (.1.2) AT5G40380 39 / 0.0009 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033032 [exp] 223 / 6e-72 AT5G20050 483 / 4e-169 Protein kinase superfamily protein (.1) Lus10002917 [exp] 49 / 4e-07 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 48 / 6e-07 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10028067 [exp] 43 / 3e-05 AT5G35370 844 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025617 [exp] 42 / 6e-05 AT5G35370 469 / 2e-156 S-locus lectin protein kinase family protein (.1) Lus10031229 [exp] 41 / 6e-05 AT4G11890 58 / 2e-10 Protein kinase superfamily protein (.1.2.3.4) Lus10008486 [exp] 42 / 7e-05 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 42 / 8e-05 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029553 [exp] 42 / 8e-05 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070800 [exp] 154 / 1e-45 AT5G20050 516 / 0.0 Protein kinase superfamily protein (.1) Potri.011G003900 [exp] 57 / 4e-10 AT5G38280 413 / 1e-135 PR5-like receptor kinase (.1) Potri.004G014250 [exp] 54 / 5e-09 AT1G70250 364 / 5e-115 receptor serine/threonine kinase, putative (.1) Potri.004G014200 [exp] 54 / 5e-09 AT5G38280 392 / 5e-128 PR5-like receptor kinase (.1) Potri.004G014301 [exp] 54 / 6e-09 AT4G32300 312 / 9e-98 S-domain-2 5 (.1) Potri.004G014450 [exp] 53 / 9e-09 AT4G32300 316 / 9e-99 S-domain-2 5 (.1) Potri.004G014512 [exp] 52 / 2e-08 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.004G014700 [exp] 52 / 2e-08 AT5G38280 457 / 3e-153 PR5-like receptor kinase (.1) Potri.018G027300 [exp] 50 / 1e-07 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.011G004000 [exp] 49 / 4e-07 AT4G32300 277 / 2e-82 S-domain-2 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013660 pacid=23171590 polypeptide=Lus10013660 locus=Lus10013660.g ID=Lus10013660.BGIv1.0 annot-version=v1.0 ATGGAGAACAAGACTGTCAACATCCTAGCCTGCTCCACAATCACCTTACTCCTCATCATCATAATCGTCGCCCGAGTCTCCCTCAACCTCTCCCGAACTT TCTTCTTCATCGCCGGCGCCGATGTCGCCGTAATCCTCGCCGTCTTCTCCTGCCTCCTTATCAGGCGCCGCTACAATAACAGGAGCAAAATCCTCCAGAC TCAAATGGTCTCCGAAAACAAAGAGCTACGCATCGAGTACAGCTTCCTCCGCAAAGTCGCTGGCGTTCCCACCAAGTTCCGGCACCAAGAACTCGAGGAC GCCACCGAAAACTTCAAATCCTTTCTCGGAAGAGGATCCTCTGCTTCGGTCTTCAAAGGCGTGTTGAAACTCTACTTCGGTCGTCAAAGGCGTGTTGTAA GGCGGGAAGGAAGTGGCTGTGAAGCGGATCGGGGCGGAAGAAAAGGGTGA
AA sequence Show only first row Show all	>Lus10013660 pacid=23171590 polypeptide=Lus10013660 locus=Lus10013660.g ID=Lus10013660.BGIv1.0 annot-version=v1.0 MENKTVNILACSTITLLLIIIIVARVSLNLSRTFFFIAGADVAVILAVFSCLLIRRRYNNRSKILQTQMVSENKELRIEYSFLRKVAGVPTKFRHQELED ATENFKSFLGRGSSASVFKGVLKLYFGRQRRVVRREGSGCEADRGGRKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20050			Protein kinase superfamily pro...		Lus10013660 [exp]	0	1
AT5G20050			Protein kinase superfamily pro...		Lus10013659 [exp]	10.4	0.7217
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	18.8	0.7146
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10023420 [exp]	26.0	0.6262
AT2G33490			hydroxyproline-rich glycoprote...		Lus10001808 [exp]	27.4	0.6368
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10043009 [exp]	47.5	0.6411
AT1G72020			unknown protein		Lus10009443 [exp]	54.7	0.6145
AT3G53810			Concanavalin A-like lectin pro...		Lus10004982 [exp]	65.2	0.6194
					Lus10021106 [exp]	103.0	0.5922
AT5G63440			Protein of unknown function (D...		Lus10022455 [exp]	132.8	0.5710
AT2G48020			Major facilitator superfamily ...		Lus10042676 [exp]	174.7	0.5582

Compare expression of checked genes

Lus10013660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.