Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63200 766 / 0 tetratricopeptide repeat (TPR)-containing protein (.1) AT3G11540 61 / 3e-09 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G04240 57 / 3e-08 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G12400 50 / 5e-06 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G62740 43 / 0.0006 Hop2 Hop2, stress-inducible protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033033 [exp] 833 / 0 AT5G63200 542 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10021336 [exp] 60 / 5e-09 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003113 [exp] 59 / 9e-09 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017009 [exp] 59 / 1e-08 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004779 [exp] 59 / 1e-08 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 58 / 3e-08 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027124 [exp] 49 / 1e-05 AT5G56290 1003 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Lus10032883 [exp] 49 / 1e-05 AT5G56290 758 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Lus10021972 [exp] 48 / 1e-05 AT1G22700 312 / 5e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G092000 [exp] 828 / 0 AT5G63200 759 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Potri.019G025600 [exp] 66 / 5e-11 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 61 / 4e-09 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 61 / 4e-09 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G051400 [exp] 60 / 4e-09 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G170000 [exp] 45 / 0.0002 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.001G473100 [exp] 45 / 0.0002 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.011G108800 [exp] 44 / 0.0002 AT1G78770 907 / 0.0 anaphase promoting complex 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10013661 pacid=23171594 polypeptide=Lus10013661 locus=Lus10013661.g ID=Lus10013661.BGIv1.0 annot-version=v1.0 ATGGATGAAATCCCGGATCTTCCAAGAGCTCATCCTGTGCTTGTGAAACCAGAGCTTGACACCATGGGAGACAGCTCCATGATGTCACAGTCCTCCAAGA TTGTAATTCTCGCTGACCTCAATGCCAATCCTCCCGAAACAGACGCCGCCGACTCCGTCCTAATCATTGCTGCTCCTGATATCCCCAGGTTGAATAATAA CGAGACTCAAGAGAAAGGGAGCAAAGATACGGATGCGGTGGAAGGTGAAGCTAAAAAATTCAGCAAGCTAGGAAAGTGCCGGTCGAGAAGTAGTAAGGGA GATGCAGGGTTTGATTTTGGAGGTGATGCAGATGCCGATCAACACTGTCAAGGTTCTGTCTCTTCTCGTGAAGAAAAAGTCAGCAGCCTTAAAACGGGTT TGGTTCATGTTGCAAGGAAAATGCCAAAAAATGCTCATGCGCATTTTATACTTGGCTTAATGTACCAAAGGTTGGGTCAGCCCCAGAAGGCAGTTTTAGC TTATGAGAAGGCCGAAGAGATTTTACTCCGTTGTGAGGTTGAGGTTGCCAGACCAGAATTGCTTTCTTTAGTTCAGATTCACCACGCCCAGTGTATTCTC CTTGAGAATTTCCCTGACAGTAATCATGATAAAGAACTGGGACCTGATGAACTCGGTCAAATCCTTTCTAAGTTGAAAGAATCTATGCATACGGATTGTA TTCTCCTTGAGAATTTCCCTGACAGTAATCTTGATAAAGAACTTGGACCTGATGAACTCGGTCAAATCCTTTCTAAGTTGAACGAATCTATGCATACGGA TGTTAGGCAAGCAGCAATTTGGAATACACTGGGTTTGATACTTCTAAAATCTGGTCGTCTTCAGAATGCAATTTCAGCCTTTTCATCTTTGTTGGCTGCT GCCCCAAACAATTTTGACTGCCTCGCAAATTTGGGCATTGCATACCTTCAAAGTGGAGATTTAGAACTGTCTGCCAAATGTTTTCAAGATTTGGTTCTCA AAGATCAAAATCATCCTGCTGCCTTAGTCAACTATGCGGCTATTCTGCTGTGTAAATATGGATCAGTCATCGCAGGTGCCGGAGCACATGCTGGCGATGG AGCTTCCATGGATCAGTTTGAAGCTGCTCGTGCTGCAAAAGAATGTTTGTTGGCTTCATTGAAACTTGATCCTAAAGCATCCCATGCATGGGCTAATCTT GCGAATGCATATTATATGACTGGTGACCACAAGAGCTCTAGCAAGTGCTTGGAGAAGGCTGCAAAACTGGAGCCTAATTGTATGTCAATGCGATATGCGG TTGCAATCCATAGAGTGAAGGATGCAGAACGGTCTCAAGATCCAGGCGAACAACTTTCTTGGGCTGGAAATGAAATGGCATCGGTGCTGAGAGAAGGTGA TTCAGTTCCAACTGAGCCACCAATAGTGTGGGCCGGACTAGCCATTGTTCATAAAGCTCAACATGAGATAGCATCAGCATTTCAGACACAACCGAATGAG TTGGTGGAAGCAGAAGAGCGTGCATTCTACAGTTCAAAACAGGCAATAGGAGAGGATCCAGATGACGGTATACATTGGCATCAACTTGGGCTACATTGTC TTTGTTCGCGCAAGTTTGAAACTGCCCAAAAGTATCTAAAACTTGCGGTTGCTCGTTTAAAAGAATCCAGCTATGCATGGTCGAATCTTGGTGTGTCCCT TCAGTTGTGTGAAGAAGAGTCTTCACAAGCTGAAGAAGTGTACAAGCGAGCCTTGTCACTGGCAACAGCGGAACAAGGACACGCAATATTTTCAAATCTA GGGAATCTGTACCGGCAACAGAAGAAGTATGAACGTGCCAAGGCGATGCTAACAAAGGCACTTGAACTGAAACCAGGGTATGCACCTGCGTTCAACAATA TGGGGCTTGTGTTTGTGGCTGAGGGTAGGTGGGAGGAGGCAGTGTTCTGTTTCGAAAAGGCCCTTGAGGGAGATCCATTGCTGGATGCAGCTAAGTCCAA CATCATTAAGGCCACTTCTATCTCTAAATTATGCGCCCGCCTCTCCAATTGTCACCTGCACCGCTGA
AA sequence Show only first row Show all	>Lus10013661 pacid=23171594 polypeptide=Lus10013661 locus=Lus10013661.g ID=Lus10013661.BGIv1.0 annot-version=v1.0 MDEIPDLPRAHPVLVKPELDTMGDSSMMSQSSKIVILADLNANPPETDAADSVLIIAAPDIPRLNNNETQEKGSKDTDAVEGEAKKFSKLGKCRSRSSKG DAGFDFGGDADADQHCQGSVSSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVLAYEKAEEILLRCEVEVARPELLSLVQIHHAQCIL LENFPDSNHDKELGPDELGQILSKLKESMHTDCILLENFPDSNLDKELGPDELGQILSKLNESMHTDVRQAAIWNTLGLILLKSGRLQNAISAFSSLLAA APNNFDCLANLGIAYLQSGDLELSAKCFQDLVLKDQNHPAALVNYAAILLCKYGSVIAGAGAHAGDGASMDQFEAARAAKECLLASLKLDPKASHAWANL ANAYYMTGDHKSSSKCLEKAAKLEPNCMSMRYAVAIHRVKDAERSQDPGEQLSWAGNEMASVLREGDSVPTEPPIVWAGLAIVHKAQHEIASAFQTQPNE LVEAEERAFYSSKQAIGEDPDDGIHWHQLGLHCLCSRKFETAQKYLKLAVARLKESSYAWSNLGVSLQLCEEESSQAEEVYKRALSLATAEQGHAIFSNL GNLYRQQKKYERAKAMLTKALELKPGYAPAFNNMGLVFVAEGRWEEAVFCFEKALEGDPLLDAAKSNIIKATSISKLCARLSNCHLHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10013661 [exp]	0	1
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	4.5	0.8179
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Lus10036169 [exp]	5.2	0.8040
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	5.5	0.8128
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10033033 [exp]	6.0	0.7737
AT3G21480			BRCT domain-containing DNA rep...		Lus10033984 [exp]	8.5	0.7953
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10008553 [exp]	10.2	0.7471
AT2G41020			WW domain-containing protein (...		Lus10027285 [exp]	10.4	0.7560
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	10.7	0.7540
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10018440 [exp]	11.0	0.7852
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	12.0	0.7966

Compare expression of checked genes

Lus10013661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.