Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24805 297 / 3e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G24480 296 / 1e-101 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G01710 106 / 4e-26 methyltransferases (.1) AT2G16030 98 / 2e-24 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26730 79 / 2e-17 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G53400 57 / 4e-09 unknown protein AT5G03190 41 / 0.0005 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036941 [exp] 305 / 1e-104 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 299 / 1e-102 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022081 [exp] 273 / 4e-90 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10039718 [exp] 115 / 6e-31 AT2G16030 267 / 7e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018506 [exp] 103 / 2e-26 AT2G16030 269 / 9e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012217 [exp] 101 / 3e-24 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10001267 [exp] 99 / 2e-23 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10014232 [exp] 93 / 4e-21 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10022682 [exp] 78 / 3e-16 AT5G01710 698 / 0.0 methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088400 [exp] 321 / 2e-111 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G052100 [exp] 304 / 7e-105 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G152100 [exp] 103 / 2e-26 AT2G16030 225 / 1e-74 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G125300 [exp] 89 / 4e-21 AT2G16030 197 / 2e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G128100 [exp] 85 / 2e-18 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.006G105100 [exp] 81 / 4e-17 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 78 / 3e-16 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.006G128800 [exp] 69 / 4e-13 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 59 / 8e-10 AT3G53400 420 / 6e-144 unknown protein Potri.005G245800 [exp] 44 / 6e-05 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10013662 pacid=23171599 polypeptide=Lus10013662 locus=Lus10013662.g ID=Lus10013662.BGIv1.0 annot-version=v1.0 ATGAAGCTTCCCGTTCTGATGAAACCTTTCATATTATCATTCTTGTTTTCCCTCTCAATTCTCCTCCTCTACTTTCTCATCTCTTCTCGCTCCCTCTCCC CACCATCCCCTCCTCATCACATCAAAACCACCACCACCACCACCTCCCCCGCCGGCATCCGCATCCGCCCTGGCATCCACTCCTACGAATCCTACATCCA GCTCCAGCTTAACAAAACCCTCAACCCCAAGCTCCGACAATTATGGAAGACCCGCGACTGGGACCGTAAAGTCCGCGTCTTCTCCTCCTTCTTCCTCTCC CTTCAACAACGCCGCCTCCTCTATAACTCCTCACGTGCCCTCTCCATTGGCGCCCGCGTCGGCCAGGAGGTCCAAGCCCTGCGTCGCGTCGGCGTCAACG ACTCCATCGGCATCGACCTTGTCCCTTCCCCACCTCTTGTCCTCAAGGGCGACTTCCACGACCAGCCCTTCCCCAATTCCACCTTTGACTTCGAATTCTC CAACGTCTTCGACCACGCGCTCTACCCTGAACGTTTCGTCAGGGAAATTGAGCGTACGCTCAAGCCAGGTGGCGTCTGTGTCCTCCACGTCTCCATCTCC AAACGCGCCGATAAGTACTCCGCTAACGACCTCTTCAGCGTTGGGCCCTTGGTGGACCTGTTTACTAAGTCGGATCTGCTTGGAGTCCGCCGGGTTGATG GGTTCGGGCTTGACACCGAGGTCGTGCTCCGGAAAAGAAGAAACGACAAGGGAACCACCACAGATAAGGCAAAGAGAAGCGTACAAAACTAA
AA sequence Show only first row Show all	>Lus10013662 pacid=23171599 polypeptide=Lus10013662 locus=Lus10013662.g ID=Lus10013662.BGIv1.0 annot-version=v1.0 MKLPVLMKPFILSFLFSLSILLLYFLISSRSLSPPSPPHHIKTTTTTTSPAGIRIRPGIHSYESYIQLQLNKTLNPKLRQLWKTRDWDRKVRVFSSFFLS LQQRRLLYNSSRALSIGARVGQEVQALRRVGVNDSIGIDLVPSPPLVLKGDFHDQPFPNSTFDFEFSNVFDHALYPERFVREIERTLKPGGVCVLHVSIS KRADKYSANDLFSVGPLVDLFTKSDLLGVRRVDGFGLDTEVVLRKRRNDKGTTTDKAKRSVQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24805			S-adenosyl-L-methionine-depend...		Lus10013662 [exp]	0	1
AT5G01710			methyltransferases (.1)		Lus10001267 [exp]	1.4	0.8789
AT5G40140			RING/U-box superfamily protein...		Lus10039447 [exp]	6.3	0.7929
AT5G01710			methyltransferases (.1)		Lus10012217 [exp]	7.9	0.8481
AT5G11000			Plant protein of unknown funct...		Lus10041022 [exp]	8.1	0.7919
					Lus10026314 [exp]	8.5	0.8192
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10005005 [exp]	9.7	0.8034
AT1G01540			Protein kinase superfamily pro...		Lus10007919 [exp]	9.8	0.8050
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031655 [exp]	10.5	0.7398
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10031685 [exp]	11.8	0.7971
AT4G39840			unknown protein		Lus10024058 [exp]	13.1	0.7937

Compare expression of checked genes

Lus10013662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.