Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63180 444 / 4e-157 Pectin lyase-like superfamily protein (.1) AT4G24780 427 / 1e-150 Pectin lyase-like superfamily protein (.1.2) AT1G67750 414 / 8e-146 Pectate lyase family protein (.1) AT3G27400 387 / 6e-135 Pectin lyase-like superfamily protein (.1) AT4G13710 384 / 2e-133 Pectin lyase-like superfamily protein (.1.2) AT3G24670 377 / 2e-130 Pectin lyase-like superfamily protein (.1) AT3G07010 369 / 6e-128 Pectin lyase-like superfamily protein (.1) AT1G04680 363 / 2e-125 Pectin lyase-like superfamily protein (.1) AT3G24230 358 / 3e-123 Pectate lyase family protein (.1) AT5G48900 355 / 2e-122 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033037 [exp] 471 / 1e-167 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013668 [exp] 423 / 1e-151 AT5G63180 424 / 2e-149 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 418 / 2e-147 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011400 [exp] 412 / 9e-145 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10006456 [exp] 410 / 5e-144 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10014887 [exp] 388 / 2e-135 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 387 / 4e-135 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 383 / 7e-133 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011758 [exp] 382 / 8e-133 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087800 [exp] 459 / 3e-163 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 452 / 5e-161 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 417 / 4e-147 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 412 / 3e-145 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 404 / 2e-141 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.002G238800 [exp] 380 / 4e-132 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 379 / 1e-131 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 377 / 2e-130 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 375 / 1e-129 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.006G122000 [exp] 323 / 7e-109 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10013667 pacid=23171616 polypeptide=Lus10013667 locus=Lus10013667.g ID=Lus10013667.BGIv1.0 annot-version=v1.0 ATGAACTCATTCAAAACCATCGACGGCAGAGGATCCAGTGTCCACATCTCGGGAGGACCCTGCATCACCGTCCAATTCGTGACCAATATAATCATCCACG GGATACACATCCACGACTGCAAGCAAGGCGGGAACACCAACGTGCGGGACTCCCCACGGCACTACGGGTGGAGGACGATATCGGACGGCGATGGTGTGTC CATCTTTGGTGGGAGCCACGTGTGGGTGGATCATTGCTCGTTAGCTAACTGTAACGACGGCCTGATAGACGCGATCCATGGGTCCACAGCGATTACAATC TCCAACAATTACATGACCCACCACGACAAAGTCATGTTGCTGGGACACAGTGACACGTATACTCAGGACAAGAACATGCAGGTCACCATTGCCTTTAATC ACTTTGGCGAAGGTCTCGTTCAGAGAATGCCCAGGTGTAGGCATGGGTATTTCCATGTGGTCAACAATGACTACACACATTGGGAAATGTATGCCATTGG AGGGAGTGCTAATCCAACCATCAACAGTCAAGGCAATAGATTCGTTGCTCCAGATATTAGGTTTAGCAAAGAGGTGACGAAGCACGAAGATGCACCGGAG AGCGAGTGGAAGAATTGGAATTGGAGATCGGAAGGGGACATGTTGATGAATGGGGCATTTTTTACGGCATCGGGAGCAGGGGCATCATCATCAAGCTATG CAAAGGCTTCGAGTTTAGGAGCAAGGCCATCTTCACTTGTGGGTACAATTACTATGGCATCCGGTGCTCTCAATTGCAGGAGAGGCTCTCGTTGCTAG
AA sequence Show only first row Show all	>Lus10013667 pacid=23171616 polypeptide=Lus10013667 locus=Lus10013667.g ID=Lus10013667.BGIv1.0 annot-version=v1.0 MNSFKTIDGRGSSVHISGGPCITVQFVTNIIIHGIHIHDCKQGGNTNVRDSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLANCNDGLIDAIHGSTAITI SNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDIRFSKEVTKHEDAPE SEWKNWNWRSEGDMLMNGAFFTASGAGASSSSYAKASSLGARPSSLVGTITMASGALNCRRGSRC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63180			Pectin lyase-like superfamily ...		Lus10013667 [exp]	0	1
AT5G63180			Pectin lyase-like superfamily ...		Lus10013668 [exp]	1.0	0.9833
AT5G63180			Pectin lyase-like superfamily ...		Lus10033037 [exp]	1.4	0.9583
AT3G03770			Leucine-rich repeat protein ki...		Lus10005689 [exp]	6.2	0.8485
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10010152 [exp]	6.3	0.8300
AT1G06475			unknown protein		Lus10020752 [exp]	6.5	0.8400
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10037285 [exp]	6.7	0.8424
AT1G06475			unknown protein		Lus10007328 [exp]	7.2	0.8130
AT4G24780			Pectin lyase-like superfamily ...		Lus10013666 [exp]	9.6	0.8476
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10036763 [exp]	12.7	0.8000
AT3G62060			Pectinacetylesterase family pr...		Lus10038024 [exp]	13.4	0.8288

Compare expression of checked genes

Lus10013667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.