Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63180 399 / 2e-139 Pectin lyase-like superfamily protein (.1) AT4G24780 377 / 3e-131 Pectin lyase-like superfamily protein (.1.2) AT1G67750 369 / 5e-128 Pectate lyase family protein (.1) AT4G13710 348 / 4e-119 Pectin lyase-like superfamily protein (.1.2) AT3G27400 345 / 1e-118 Pectin lyase-like superfamily protein (.1) AT3G24670 336 / 9e-115 Pectin lyase-like superfamily protein (.1) AT3G07010 330 / 2e-112 Pectin lyase-like superfamily protein (.1) AT1G04680 326 / 1e-110 Pectin lyase-like superfamily protein (.1) AT3G24230 323 / 3e-109 Pectate lyase family protein (.1) AT5G48900 315 / 2e-106 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013667 [exp] 423 / 1e-151 AT5G63180 469 / 4e-167 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 422 / 1e-148 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 372 / 4e-129 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011400 [exp] 366 / 1e-126 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10006456 [exp] 364 / 4e-126 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10014887 [exp] 346 / 8e-119 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 345 / 2e-118 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023679 [exp] 344 / 2e-117 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10038157 [exp] 343 / 2e-117 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087800 [exp] 411 / 2e-144 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 405 / 3e-142 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 369 / 3e-128 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 366 / 8e-127 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 360 / 4e-124 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.014G178100 [exp] 341 / 1e-116 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G238800 [exp] 341 / 2e-116 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 338 / 4e-115 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 337 / 7e-115 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G148800 [exp] 296 / 9e-99 AT5G15110 523 / 0.0 Pectate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10013668 pacid=23171582 polypeptide=Lus10013668 locus=Lus10013668.g ID=Lus10013668.BGIv1.0 annot-version=v1.0 ATGACAATTCTTTACACTTCAAAAAAAAAAAAAAACACCGTCCAATTCGTGACCAATATAATCATCCACGGGATACACATCCACGACTGCAAGCAAGGCG GGAACACCAACGTGCGGGACTCCCCACGGCATTACGGGTGGAGGACGATATCGGACGGCGATGGTGTGTCCATCTTTGGTGGGAGCCGCGTGTGGGTGGA TCATTGCTCGTTAGCTAACTGTAACGACGGCCTGATAGACGCGATCCATGGGTCCACAGCGATTACAATCTCCAACAATTACATGACCCACCACGACAAA GTCATGTTGCTGGGACACAGTGACACGTATACTCAGGACAAGAACATGCAGGTCACCATTGCCTTTAATCACTTTGGCGAAGGTCTCGTTCAGAGAATGC CCAGGTGTAGGCATGGGTATTTCCATGTGGTCAACAATGACTACACACATTGGGAAATGTATGCCATTGGAGGGAGTGCTAATCCAACCATCAACAGTCA AGGCAATAGATTCGTTGCTCCAGATATCAGGTTTAGCAAAGAGGTGACGAAGCACGAAGATGCACCGGAGAGCGAGTGGAAGAATTGGAATTGGAGATCG GAAGGGGACATGTTGATGAATGGGGCATTTTTTACGGCATCGGGAGCAGGGGCATCATCATCAAGCTATGCAAAGGCTTCGAGTTTAGGAGCAAGGCCAT CTTCACTTGTGGGTACAATTACTATGGCATCCGGTGCTCTCAATTGCAGGAGAGGCTCTCCTTTTTTGCCACTCTCTCTCGTTGCTAGCTAG
AA sequence Show only first row Show all	>Lus10013668 pacid=23171582 polypeptide=Lus10013668 locus=Lus10013668.g ID=Lus10013668.BGIv1.0 annot-version=v1.0 MTILYTSKKKKNTVQFVTNIIIHGIHIHDCKQGGNTNVRDSPRHYGWRTISDGDGVSIFGGSRVWVDHCSLANCNDGLIDAIHGSTAITISNNYMTHHDK VMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDIRFSKEVTKHEDAPESEWKNWNWRS EGDMLMNGAFFTASGAGASSSSYAKASSLGARPSSLVGTITMASGALNCRRGSPFLPLSLVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63180			Pectin lyase-like superfamily ...		Lus10013668 [exp]	0	1
AT5G63180			Pectin lyase-like superfamily ...		Lus10013667 [exp]	1.0	0.9833
AT5G63180			Pectin lyase-like superfamily ...		Lus10033037 [exp]	2.0	0.9222
AT3G62060			Pectinacetylesterase family pr...		Lus10038024 [exp]	2.4	0.8716
AT1G06475			unknown protein		Lus10020752 [exp]	4.6	0.8503
AT3G03770			Leucine-rich repeat protein ki...		Lus10005689 [exp]	6.3	0.8562
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10037285 [exp]	7.3	0.8469
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10035020 [exp]	10.0	0.8082
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015833 [exp]	12.4	0.8278
AT4G35320			unknown protein		Lus10026561 [exp]	12.6	0.8566
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	13.3	0.8472

Compare expression of checked genes

Lus10013668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.