Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48360 371 / 6e-128 ATBT2, BT2 BTB and TAZ domain protein 2 (.1) AT5G63160 368 / 1e-126 BT1 BTB and TAZ domain protein 1 (.1) AT5G67480 245 / 2e-78 ATBT4, BT4 BTB and TAZ domain protein 4 (.1.2) AT1G05690 244 / 4e-78 BT3 BTB and TAZ domain protein 3 (.1) AT4G37610 238 / 5e-76 BT5 BTB and TAZ domain protein 5 (.1) AT4G08455 66 / 2e-12 BTB/POZ domain-containing protein (.1) AT1G55760 66 / 8e-12 BTB/POZ domain-containing protein (.1) AT3G03740 53 / 2e-07 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT1G79000 53 / 3e-07 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) AT3G06190 49 / 2e-06 ATBPM2 BTB-POZ and MATH domain 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042082 [exp] 515 / 0 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10018087 [exp] 513 / 0 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10033038 [exp] 293 / 2e-99 AT5G63160 184 / 5e-57 BTB and TAZ domain protein 1 (.1) Lus10019299 [exp] 263 / 4e-85 AT5G67480 487 / 7e-173 BTB and TAZ domain protein 4 (.1.2) Lus10025196 [exp] 259 / 7e-84 AT5G67480 425 / 9e-149 BTB and TAZ domain protein 4 (.1.2) Lus10011523 [exp] 250 / 2e-80 AT5G67480 482 / 6e-171 BTB and TAZ domain protein 4 (.1.2) Lus10042763 [exp] 71 / 8e-14 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10029732 [exp] 69 / 4e-13 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10008348 [exp] 60 / 6e-10 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087700 [exp] 484 / 2e-172 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.012G091400 [exp] 478 / 3e-170 AT5G63160 404 / 7e-141 BTB and TAZ domain protein 1 (.1) Potri.007G140400 [exp] 279 / 2e-91 AT1G05690 407 / 3e-141 BTB and TAZ domain protein 3 (.1) Potri.017G009700 [exp] 268 / 8e-87 AT1G05690 451 / 9e-159 BTB and TAZ domain protein 3 (.1) Potri.007G055100 [exp] 239 / 1e-75 AT5G67480 438 / 2e-153 BTB and TAZ domain protein 4 (.1.2) Potri.005G183600 [exp] 73 / 2e-14 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1) Potri.002G077000 [exp] 72 / 5e-14 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.001G468700 [exp] 57 / 5e-09 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G003400 [exp] 54 / 2e-07 AT1G79000 1847 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.014G000500 [exp] 54 / 2e-07 AT1G79000 1829 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02135 [flax] [poplar] zf-TAZ TAZ zinc finger CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10013670 pacid=23171596 polypeptide=Lus10013670 locus=Lus10013670.g ID=Lus10013670.BGIv1.0 annot-version=v1.0 ATGGAGGAACAAGTTCACCTTCCATCAGCTACGGATGTCTGCGGCGCCTCCGAGCATTTCGATCTCGCAGGAGACCGCAACACTTGGCGAAACCTGCCTC AGCCTGACGTCCGCATCCTGACCACCGGCGGCCTCCGCATTCCGGCACACACTGCTGTCTTGGCCGCGGCATCCCCTGTACTGGAGAGTATTATAGACAA TCCGCCAAAGCACCGGAGCTCCGATCCGATCATTCCAATACTCGGCGTCCCTTGTGACGCTGTCGTCGTCTTTGTCCGATTCCTCTACTCGTCAAGGTGC GGTGAAGATGAGCTGGCCAAGTTTGGGATCCATCTTCTGACATTGTCACACGTCTACTTGGTTCCTCACCTGAAGCAACGATGCGCCAAGGCATTGAGTC GTAACTTGGACATTCAGAACGTGGTGGATGTTGTTCAGCTGGCAAGGCTATGCGATGCGCCAGAGCTTTACCTCAAGTGCATGAAGTTGGTTTTTAACAA CTTCAAGGCCGTGGAGAAAACGGAAGGGTGGTTATTCATGCAAGACCATGATCCTTGGCTGGAGCTTGAGATCCTGCAGTTCATTGATGAAACTGAACTG AGGAAGAAAAAAAGCAGAAGGCACAGAGAGGCGCAAGGGTTGTACATGGAGCTTGGGGACGCGATGGAATGTCTAGAACACATATGCAGTGAAGGGTGCA CAAGTGTTGGGCCGTATGACGCAGAACCAAAGAGGAAGAGACCTTGTAGCAAGTTCTCTATCTGTGAAGGCGTTCAGCTATTGATAAAGCATTTTGCTAG TTGTAAGAAGCGGGTTAATGGAGGGTGCTCCCGTTGTAAAAGGATGTTGCAACTCCTCAGGCTTCACGCTTCAATCTGTGACCAACACGATTCTTGCAAA GTCCCTCTTTGCAGACAATTCAAATTGAGAATGCAGCAAGAGAAAAAGGGTGAGGACTCCTCGTTGTGGAAGTTGCTAGTGAGGAAAGTGGTGTCTGCGA GGGCCGTATGTAACTTATCCTTTGCCAAGCGGCAACGGGAAGATATTAAGATGCGCAGTTGA
AA sequence Show only first row Show all	>Lus10013670 pacid=23171596 polypeptide=Lus10013670 locus=Lus10013670.g ID=Lus10013670.BGIv1.0 annot-version=v1.0 MEEQVHLPSATDVCGASEHFDLAGDRNTWRNLPQPDVRILTTGGLRIPAHTAVLAAASPVLESIIDNPPKHRSSDPIIPILGVPCDAVVVFVRFLYSSRC GEDELAKFGIHLLTLSHVYLVPHLKQRCAKALSRNLDIQNVVDVVQLARLCDAPELYLKCMKLVFNNFKAVEKTEGWLFMQDHDPWLELEILQFIDETEL RKKKSRRHREAQGLYMELGDAMECLEHICSEGCTSVGPYDAEPKRKRPCSKFSICEGVQLLIKHFASCKKRVNGGCSRCKRMLQLLRLHASICDQHDSCK VPLCRQFKLRMQQEKKGEDSSLWKLLVRKVVSARAVCNLSFAKRQREDIKMRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10013670 [exp]	0	1
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	3.5	0.9518
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	3.7	0.9520
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	4.5	0.9525
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10027814 [exp]	5.2	0.8909
					Lus10013898 [exp]	9.4	0.9005
AT5G26594		ARR24	response regulator 24 (.1)		Lus10005407 [exp]	10.2	0.9254
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	10.2	0.9426
AT1G71980			Protease-associated (PA) RING/...		Lus10000053 [exp]	10.6	0.8886
AT1G71980			Protease-associated (PA) RING/...		Lus10009438 [exp]	13.7	0.8354
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	13.8	0.8619

Compare expression of checked genes

Lus10013670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.