Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61640 165 / 4e-52 PMSR1, ATMSRA1 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) AT5G07470 164 / 1e-51 PMSR3, ATMSRA3 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) AT4G25130 164 / 4e-51 PMSR4 peptide met sulfoxide reductase 4 (.1) AT5G07460 155 / 3e-48 PMSR2, ATMSRA2 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, peptidemethionine sulfoxide reductase 2 (.1) AT2G18030 53 / 1e-08 Peptide methionine sulfoxide reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033039 [exp] 244 / 2e-83 AT5G61640 256 / 6e-88 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Lus10032504 [exp] 175 / 3e-55 AT4G25130 348 / 6e-122 peptide met sulfoxide reductase 4 (.1) Lus10043002 [exp] 171 / 1e-53 AT4G25130 346 / 5e-121 peptide met sulfoxide reductase 4 (.1) Lus10019755 [exp] 96 / 2e-23 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10041922 [exp] 55 / 3e-09 AT2G18030 370 / 9e-131 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10028467 [exp] 54 / 6e-09 AT2G18030 364 / 1e-128 Peptide methionine sulfoxide reductase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087600 [exp] 215 / 4e-72 AT5G61640 261 / 8e-90 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.012G091100 [exp] 214 / 1e-71 AT5G61640 251 / 9e-86 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.012G115800 [exp] 173 / 1e-54 AT4G25130 351 / 3e-123 peptide met sulfoxide reductase 4 (.1) Potri.015G112268 [exp] 169 / 5e-53 AT4G25130 351 / 4e-123 peptide met sulfoxide reductase 4 (.1) Potri.007G012900 [exp] 52 / 2e-08 AT2G18030 361 / 2e-127 Peptide methionine sulfoxide reductase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01625 [flax] [poplar] PMSR Peptide methionine sulfoxide reductase
Representative CDS sequence Show only first row Show all	>Lus10013673 pacid=23171619 polypeptide=Lus10013673 locus=Lus10013673.g ID=Lus10013673.BGIv1.0 annot-version=v1.0 ATGGCCGCCAACAACCCAGCTCTGGACCCTGCTCTCGATCAACCGGAGAACTCAACCCACCAGTTTGCTGAGTTCGGCGGTGGCTGCTTCTGGGGAGTGG AGCTGGCCTTCCAGCGAGTCCCTGGTGTGGTGAAGACGGAGGTCGGCTATTCTCAGGGAAAGTCCCCGATCCTGACTACAGGCTCGTCTGCACCGGCACC ACCAACCACGTCGAGTCGCATCGACCCGTCAACCCTAAATCGCCAAGGAAACGACGCCGGCACCCAGTATAGATCAGGGATCTACTACTACAACGAAGAT CAGGCACGATTGGCTCAGGAATCGAAGGAATCCAAACAATTGGAACTCAAGGAAAAGAAGATCGTCACAGAGATACTTCCGGCTAAGAGATTCTACAGGG CTGAAGAGTATCATCAGCAGTACTTGGAGAAGGGCGGCGGCAGAAGCAGTAAACAATCTGCTGCTAAGGGTTGCAACGATCCCATCCGCTGTTACGGCTA A
AA sequence Show only first row Show all	>Lus10013673 pacid=23171619 polypeptide=Lus10013673 locus=Lus10013673.g ID=Lus10013673.BGIv1.0 annot-version=v1.0 MAANNPALDPALDQPENSTHQFAEFGGGCFWGVELAFQRVPGVVKTEVGYSQGKSPILTTGSSAPAPPTTSSRIDPSTLNRQGNDAGTQYRSGIYYYNED QARLAQESKESKQLELKEKKIVTEILPAKRFYRAEEYHQQYLEKGGGRSSKQSAAKGCNDPIRCYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07470		PMSR3, ATMSRA3	ARABIDOPSIS THALIANA METHIONIN...		Lus10013673 [exp]	0	1
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10031003 [exp]	4.0	0.7915
AT1G11340			S-locus lectin protein kinase ...		Lus10030766 [exp]	7.1	0.8469
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10000326 [exp]	13.0	0.8313
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10019242 [exp]	13.4	0.8399
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10032048 [exp]	15.2	0.8213
AT3G22640		PAP85	cupin family protein (.1)		Lus10022070 [exp]	17.1	0.7669
AT5G46230			Protein of unknown function, D...		Lus10033612 [exp]	21.6	0.8021
AT4G35160			O-methyltransferase family pro...		Lus10008538 [exp]	21.6	0.8213
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10027807 [exp]	24.5	0.7270
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10041744 [exp]	24.7	0.7930

Compare expression of checked genes

Lus10013673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.