Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31880 718 / 0 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) AT1G31420 234 / 1e-68 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 230 / 2e-67 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT5G62710 225 / 4e-65 Leucine-rich repeat protein kinase family protein (.1) AT1G09970 229 / 2e-64 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G49660 228 / 5e-64 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G63930 228 / 6e-64 Leucine-rich repeat protein kinase family protein (.1) AT5G45780 219 / 7e-63 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 225 / 9e-63 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 220 / 4e-61 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033041 [exp] 1070 / 0 AT2G31880 783 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10041953 [exp] 805 / 0 AT2G31880 741 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10017963 [exp] 798 / 0 AT2G31880 745 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10000509 [exp] 232 / 4e-65 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 229 / 3e-64 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10038382 [exp] 220 / 1e-63 AT4G20270 734 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10030898 [exp] 218 / 3e-62 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10038930 [exp] 223 / 5e-62 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10030591 [exp] 216 / 1e-61 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090500 [exp] 781 / 0 AT2G31880 784 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.015G086800 [exp] 777 / 0 AT2G31880 804 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.002G256500 [exp] 239 / 6e-68 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G129000 [exp] 231 / 2e-67 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G105000 [exp] 229 / 1e-66 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.011G139700 [exp] 229 / 2e-64 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 226 / 2e-63 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G059100 [exp] 220 / 3e-63 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G048800 [exp] 225 / 4e-63 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G068700 [exp] 218 / 1e-62 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10013675 pacid=23171593 polypeptide=Lus10013675 locus=Lus10013675.g ID=Lus10013675.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTCTCAGACCTCTACCTTTTCTCCTCCTCTACCTCTTCTCTTTCCTCCTCACCGTCCACGCCACCACGCTCCATCTACACCCTCCCGACC ACCACTCCATCTCCACCGTCTTCACCAACCTCAAATTCAACTCCTCCACAATCCCTCCCTGTAACATCCCCGGCGTCTTCTGTGAGCGCCGCATCTCTGC CCTTGCCAGCAACACCTATGAGCTTCGAATCACCAGGCTCGTCTTCAAGTCCAGGTCACTTACCGGAACCTTGTCTCCGGAAATCGGCCGACTGTCCGAG CTCAAAGAGCTCTCCCTACCCAACAACCGTATCGTTGACCAGATCCCTTCCGAAATAGTCAACTGCACCAATCTGGAGATTCTTGACCTCGGTAACAACC ACTTTTCCGGAAATGTCCCAAATGCTCTGTCCGCGCTTTTCCGACTCCGACTCCTTGATCTCTCTTTCAATCAATTCTCAGGGGATTTGAGTTTCCTGAA GCATTTCCCCAATTTGGAGACTCTGTCCCTCACCAACAATTTCTTCACTGGCCAGGTCCCCAAGTCCATTCGGTCTTTCCGTAATTTGCACTTTTCCGAT TTCTCCGGCAACATGTTTCTCCGAGGGGAGGTTCCGGCGCCGGAATTGGATTCCCAGTACCCAAAGCGGTACATTTTAACAGAGAAGGCGAACAGGAACA ACACCTCAGCCTCTGCCCCTACATCATCCGTCATTGCTCAAGCTCCAGGACCGTCGTCACAGCAACCCGGGAGTATTAATAAGAAATCGCGTAATAATAA AGGGAAGAAGAAGCTAGCTGGGTGGCTTCTAGGGTTTGTCGCCGGAGCCACGGCGGGGACAATATCCGGGTTCTTGTTCTGCGTCCTGTTCAGGATGATC TTAGCCACAGTGAGAGGTGCAGGAAAAGAGCAAGGGCCGGCTATATTCAGTCCAATGATTAAGAATTCGGAGGATCTAGCCTTCTTAGAGAAAGACGACG GGCTGGCTACTCTGGAGATCATCGGAAAAGGCGGCTGCGGAGAAGTTTACAAGGCGGAGCTGCCCGGCAGCAACGGCAAAATGATCGCCATCAAGAAAGT TGTTCAACCCGTGAAGGACGCAGCAGAGTTGACCGACGAAGACTCCAAGCTTTTGAATAAGAAGATGAGACAAATCAGATCGGAGATTAACACGGTGGGA CAGATCCGACACAGGAACCTTCTTCCTCTTCTTGCCCACGTCACCCGTCCGGATTGCCATTACCTGGTGTACGAATTCATGAAGAACGGCAGCCTGCAAG ATATGTTGGAAGATGTTTCACGAGAGAGGAGAGAGTTGGATTGGCCTGTTAGGTACAACATCGCGCTTGGGATAGCATCAGGGCTCGAGTACCTACACAT CAATCACAACCCAAATATCATTCATAGAGACTTGAAGCCTGGGAACATCTTACTGGACGATGACATGGAAGCTAGAATTGCTGATTTCGGGCTCGCCAAA TCGATGCCCGATACCAACACCCACATCACCACATCACACGTTGCAGGAACAGTGGGCTACATAGCGCCCGAGTATTATCAGACGTTCAAGTTTACTGACA AATGTGATATCTATAGTTTCGGGGTGGTACTCGGGGTTCTGCTGATAGGGAAGCTTCCGTCGGACGATTTTTTCCAGCACACCAGGGAGATTAGCTTAGT GAATTGGCTTAAGAATGTCATGATTTCTGAAGATCCAACCAAGGCAATTGATCAGCGGCTACTGGGGAAAGGGCATGAAGAACAGATGTTGCTGGTGCTC AAAATCGCCTGCTTTTGCACCATGGAAGATCCTAAACAGAGGCCTAACAGTAAGGATGTTAGGGCCATGTTAGCTCAAATCAAGCACTAG
AA sequence Show only first row Show all	>Lus10013675 pacid=23171593 polypeptide=Lus10013675 locus=Lus10013675.g ID=Lus10013675.BGIv1.0 annot-version=v1.0 MAASLRPLPFLLLYLFSFLLTVHATTLHLHPPDHHSISTVFTNLKFNSSTIPPCNIPGVFCERRISALASNTYELRITRLVFKSRSLTGTLSPEIGRLSE LKELSLPNNRIVDQIPSEIVNCTNLEILDLGNNHFSGNVPNALSALFRLRLLDLSFNQFSGDLSFLKHFPNLETLSLTNNFFTGQVPKSIRSFRNLHFSD FSGNMFLRGEVPAPELDSQYPKRYILTEKANRNNTSASAPTSSVIAQAPGPSSQQPGSINKKSRNNKGKKKLAGWLLGFVAGATAGTISGFLFCVLFRMI LATVRGAGKEQGPAIFSPMIKNSEDLAFLEKDDGLATLEIIGKGGCGEVYKAELPGSNGKMIAIKKVVQPVKDAAELTDEDSKLLNKKMRQIRSEINTVG QIRHRNLLPLLAHVTRPDCHYLVYEFMKNGSLQDMLEDVSRERRELDWPVRYNIALGIASGLEYLHINHNPNIIHRDLKPGNILLDDDMEARIADFGLAK SMPDTNTHITTSHVAGTVGYIAPEYYQTFKFTDKCDIYSFGVVLGVLLIGKLPSDDFFQHTREISLVNWLKNVMISEDPTKAIDQRLLGKGHEEQMLLVL KIACFCTMEDPKQRPNSKDVRAMLAQIKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10013675 [exp]	0	1
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000453 [exp]	2.8	0.8811
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	3.2	0.8732
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10041460 [exp]	4.6	0.8038
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10003336 [exp]	4.9	0.8167
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	6.2	0.8328
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023034 [exp]	7.7	0.7903
AT5G24130			unknown protein		Lus10039332 [exp]	11.0	0.8074
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10024089 [exp]	13.7	0.7652
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10002147 [exp]	14.0	0.7769
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10002741 [exp]	14.4	0.7523

Compare expression of checked genes

Lus10013675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.