Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53970 609 / 0 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT5G36160 436 / 6e-147 Tyrosine transaminase family protein (.1) AT2G20610 424 / 6e-142 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28410 402 / 1e-133 Tyrosine transaminase family protein (.1) AT4G28420 386 / 2e-127 Tyrosine transaminase family protein (.1.2) AT2G24850 371 / 1e-121 TAT3 tyrosine aminotransferase 3 (.1) AT5G57850 357 / 5e-117 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT4G23600 333 / 3e-107 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G23590 332 / 6e-107 Tyrosine transaminase family protein (.1) AT1G77670 109 / 4e-25 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017934 [exp] 780 / 0 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10018626 [exp] 512 / 1e-176 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017705 [exp] 506 / 2e-174 AT5G53970 507 / 1e-179 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10039861 [exp] 504 / 1e-173 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017704 [exp] 497 / 1e-170 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033661 [exp] 484 / 7e-166 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10033659 [exp] 480 / 4e-164 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017703 [exp] 472 / 9e-161 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10032654 [exp] 420 / 3e-141 AT5G53970 423 / 2e-147 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G115000 [exp] 537 / 0 AT5G57850 365 / 1e-125 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.017G014200 [exp] 526 / 0 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014100 [exp] 508 / 2e-175 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 498 / 2e-171 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 497 / 4e-171 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 496 / 8e-171 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 486 / 1e-166 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 465 / 2e-158 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.018G039000 [exp] 367 / 1e-120 AT5G57850 473 / 2e-167 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.007G138002 [exp] 234 / 1e-72 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10013676 pacid=23169121 polypeptide=Lus10013676 locus=Lus10013676.g ID=Lus10013676.BGIv1.0 annot-version=v1.0 ATGGAGACTCCGGCGAACATCACCATTAAAGGGATACTCAGCTTGCTGATGCAGAACGTTGATGATGATGATGATAAGAAGAAGAGCTTGATTTCTCTTG GAATGGGGGACCCTACTGCTTACTCTTGCTTCCAGACTCCTCCTGTTGCTTCTCAAGCTGTCATGGAGTCTCTTAGCTCTCACAAGTTCAATGGCTATTC CCCTACTGTTGGGCTCCCCCAGACTCGAAGGGCGATCGCGCAGTACCTGTCGATGGAACTCCCGTACGATCTATCCTCGGACGATGTCTTTGTGACCTCC GGATGCACACAAGCTATCGATGTAGCATTGGCATTGCTTGCTCACCCTGGCTCAAACATACTCCTGCCAAGACCAGGATTCCCGATTTACGAACTATGTG CTGCTTTTAGGGGGATCGAAGTCCGGCACTTTGATCTTCTCCCGCAGGATGGATGGAAGGTTGATCTTTCTGGAGTTGAATCCCTTGCTGATCACAATAC TGTTGCAATTGTGGTCATCAACCCGGGCAACCCTTGTGGCAATGTATACTCTTATCAGCATTTGAAGGAGATTGCTGACACAGCTGAAAGGCTTAAGCTC CTCATCGTTGCTGATGAGGTGTATGGACATCTCGCTTTCGGACGTAACCCTTTTGTCCCCATGGGAGTTTTCGGGTCTACTGTGCCTGTTCTTACTCTTG GTTCTCTGTCGAAACGATGGATTGTGCCTGGTTGGCGACTTGGTTGGTTTGTCACCTCTGATCCCTCCGGCACTTTTAGGAAACCAAAGACGGTCGAGCG TATCAAGAAGTATTTCGACATATTGGGAGGACCTTCCACATTCATCCAAGCAGCAGTACCTCGGATTCTCGATCAAACTGATGAGGTTTTCTTCAACGGA ACAATCAAGTTGTTGAAGCAGACTTCAGATATTTGCTTTGACCGAGTCAAGGAGATCTCTTGCATCACTTGCCCTCACAAGCCAGAAGGAGCCATGGCCG TAATGATGAAATTGAATATGTCAATGTTGGAAGACATCAGTGACGACATTGATTTCTGCTTCAAACTCGCCAAAGAGGAATCTGTTATCATTCTACCAGG AACTGCGGTTGGACTACCGAACTGGCTTCGAATCACTTTTGCAGCCGATCCGGTATCACTCGAACAGGGCTTGGCGAGGCTAAAGTCATTCTCTGCTGCA GAAGAGGTTGAGAAAGGAGGTGACTTTAAGGTTCAAGTGTTCTCATCATCCGAGTTGCTTGAGAAGCTGAATGAGAAATGGAGTTCAGTGAAGAAGAAAC CATACCCAGCAATGTACTCCAGCGCATATGGTGGGATCATTTTGGATCCAGCCCTCATGATGATACCAATTGATGACCACATGGTTCATCGCGGCCATGG AGTATTCGACACAGCCATCATTCTCGATGGGCATCTCTATGAGTTGGATGTCCACATAGAAAGGATCCTAAAATCAGCATCAAAGGCAAGGATATCATCT CCCTTCACTAAGGAAGAACTGAAGAGCATTCTCATTCAGATGACAGCAGCATCAAAGTGCACAAAGGGGACACTGAGATACTGGCTAACTGCAGGCCCTG GCAACTTCCTGCTGTCCCCAGCGGGCTGCCCGAGTTCTGCATTCTACGCGGTGGTCATCGACGAGGACTTCTCCCAACAGAAGGAAGGAGTGAAAGTCAT AACTTCCAACATCCCCATGAAGCCACCTATGTTTGCAACCTCGAAGAACGTGAACTACCTCCCCAACGTGCTTTCCATCATGGAAGCCGAAGACAAAGGA GTCTTCGCCTCGATCTGGGTCGATGACCAAGGTTACGTGGCTGAGGGTCCGAATGTGAATGTGGCTTTTGTTACTCACGACATGGAGCTGATCTTGCCTC CATTTCATAACATACTCCGCGGGTGCACTGCTGTGAGGCTTCTCGAGCTCGGGACGAAGTTGGTGGAGCAAGGGAAGTTGAAAGGTGTCAGGACTGATAA GGTTACTGTTGAGGAAGCTAAAGGTTGCTGTGAGATGATGTTTGTTGGGAGCACTCTCCCTTTGCTGCCAATAGTAATGTGGGATGATCAGTCCATTGGT GATGGGAAGGTGGGAGAGCTGATGATGGCACTGTCTGATTTGCTGTGGGATGACATGGTTGCTGGACCTGCTACTCAGAGGATTTCTGTTCCCTACGAGG AGCACTAG
AA sequence Show only first row Show all	>Lus10013676 pacid=23169121 polypeptide=Lus10013676 locus=Lus10013676.g ID=Lus10013676.BGIv1.0 annot-version=v1.0 METPANITIKGILSLLMQNVDDDDDKKKSLISLGMGDPTAYSCFQTPPVASQAVMESLSSHKFNGYSPTVGLPQTRRAIAQYLSMELPYDLSSDDVFVTS GCTQAIDVALALLAHPGSNILLPRPGFPIYELCAAFRGIEVRHFDLLPQDGWKVDLSGVESLADHNTVAIVVINPGNPCGNVYSYQHLKEIADTAERLKL LIVADEVYGHLAFGRNPFVPMGVFGSTVPVLTLGSLSKRWIVPGWRLGWFVTSDPSGTFRKPKTVERIKKYFDILGGPSTFIQAAVPRILDQTDEVFFNG TIKLLKQTSDICFDRVKEISCITCPHKPEGAMAVMMKLNMSMLEDISDDIDFCFKLAKEESVIILPGTAVGLPNWLRITFAADPVSLEQGLARLKSFSAA EEVEKGGDFKVQVFSSSELLEKLNEKWSSVKKKPYPAMYSSAYGGIILDPALMMIPIDDHMVHRGHGVFDTAIILDGHLYELDVHIERILKSASKARISS PFTKEELKSILIQMTAASKCTKGTLRYWLTAGPGNFLLSPAGCPSSAFYAVVIDEDFSQQKEGVKVITSNIPMKPPMFATSKNVNYLPNVLSIMEAEDKG VFASIWVDDQGYVAEGPNVNVAFVTHDMELILPPFHNILRGCTAVRLLELGTKLVEQGKLKGVRTDKVTVEEAKGCCEMMFVGSTLPLLPIVMWDDQSIG DGKVGELMMALSDLLWDDMVAGPATQRISVPYEEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10013676 [exp]	0	1
					Lus10025897 [exp]	2.8	0.9001
AT2G39710			Eukaryotic aspartyl protease f...		Lus10040279 [exp]	7.3	0.8821
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	8.9	0.8720
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040217 [exp]	11.3	0.8818
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034668 [exp]	12.7	0.8903
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	13.0	0.8626
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	13.0	0.8802
AT2G36090			F-box family protein (.1)		Lus10021330 [exp]	17.3	0.8658
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	20.4	0.8696
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	22.1	0.8373

Compare expression of checked genes

Lus10013676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.