Plant FIBer expression Database

Lus10013678 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017937
[exp]
313 / 2e-106 ND 42 / 4e-04
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10013678 pacid=23169092 polypeptide=Lus10013678 locus=Lus10013678.g ID=Lus10013678.BGIv1.0 annot-version=v1.0
ATGGGGTCGATCGCCGATGAAGGCAAAGTCAGCAGCAGACGAGAAGGGAAGAAAAACAGGGGAGCCCCTGTTCCTGACTTGCTGGAAGAAGCCTGGTTCT
TCAGAAAATTCATCGACGGAACCACCACCACCTCCGCCTCCGCCGCCAATAGCAAGCCAGCTGTAAGATCCATGGGCAGATGCTTCTCCGATCCCACTTC
TTCACAGAGCGTTTCCCTCCCTCCTCAGCCGGCGCCGCCGCCGCAATCCGGTGGTTTGGCGAGGGCGCCGTCGCTGCCGCCGTGTGTTGGGCGGAGGTCC
GGAGATCTTCCCGGCGGCGGAGGAGGTTGCTGTCGGAAGTCTTCCGGCAGGAGTAAAGTTGGAGAAATTAGAGAGGAAATGATGATGGTGAGGAGGGGAA
AGAGAGGGAGCAGATCGGAGAAGGGTCGGAATCCGGGGAGTTTGGAGAGAGCGCCGTCGCTGCCGCCGTGGATTGGCCGGAGTGAGGAGGAGGAGGAGGG
GGTGGAAGATGATGATGATGAGACTGATATGAGTATGAGCAGGTTGATTCAGCAGGCTATGTCTTGCTCTCTTGATGATATCTCCATTCCTAAACCCACA
AGCTCTGCTAATTCTAAGATGAACAGCAATCGGATAACGCATTCATCGAGCATGAAGAACGAGATGAGAGATAACGGTAGTAATAGCAGGAGAAGAATCA
CCCCAGTGGTAAACGACGTCGTAACCAGCAACAGTCAAACTGGAGTCGGTGATGTTCATAATCAGGGAAGGAAACTAAAGAAGACATTGAGCAACCTTGA
GATCCCTCGACAGAGGCCCAACAACAACAACGATAGATCCAGCCCCCCGATTCCTAATTGGGCCTCGGACCCAAATGCCCACTTGAGTGAAGATATCAAG
GCCCATCTCAAGGTCTGGGCCAGGTCTGTGGCTGCTAACATTCATTGA
AA sequence
>Lus10013678 pacid=23169092 polypeptide=Lus10013678 locus=Lus10013678.g ID=Lus10013678.BGIv1.0 annot-version=v1.0
MGSIADEGKVSSRREGKKNRGAPVPDLLEEAWFFRKFIDGTTTTSASAANSKPAVRSMGRCFSDPTSSQSVSLPPQPAPPPQSGGLARAPSLPPCVGRRS
GDLPGGGGGCCRKSSGRSKVGEIREEMMMVRRGKRGSRSEKGRNPGSLERAPSLPPWIGRSEEEEEGVEDDDDETDMSMSRLIQQAMSCSLDDISIPKPT
SSANSKMNSNRITHSSSMKNEMRDNGSNSRRRITPVVNDVVTSNSQTGVGDVHNQGRKLKKTLSNLEIPRQRPNNNNDRSSPPIPNWASDPNAHLSEDIK
AHLKVWARSVAANIH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15115 unknown protein Lus10013678
[exp]
0 1
AT2G22590 UDP-Glycosyltransferase superf... Lus10025711
[exp]
5.5 0.8506
AT4G01330 Protein kinase superfamily pro... Lus10041593
[exp]
7.0 0.8783
AT1G10200 LIM WLIM1, SF3 WLIM1, GATA type zinc finger t... Lus10043462
[exp]
14.1 0.8506
AT3G17120 unknown protein Lus10037790
[exp]
14.7 0.8579
AT4G25330 unknown protein Lus10006358
[exp]
15.2 0.8388
AT1G13580 LOH3, LAG13 LAG One Homologue 3, LAG1 long... Lus10029096
[exp]
18.2 0.8201
AT1G11545 XTH8 xyloglucan endotransglucosylas... Lus10018365
[exp]
23.7 0.8662
AT1G64650 Major facilitator superfamily ... Lus10000336
[exp]
29.7 0.8648
AT1G64640 AtENODL8 early nodulin-like protein 8 (... Lus10033227
[exp]
34.6 0.8632
AT4G12520 Bifunctional inhibitor/lipid-t... Lus10024625
[exp]
36.9 0.8320

Lus10013678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.