Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15095 146 / 3e-36 HCF243 high chlorophyll fluorescence 243, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017938 [exp] 838 / 0 AT3G15095 169 / 4e-44 high chlorophyll fluorescence 243, unknown protein Lus10019920 [exp] 47 / 2e-05 AT5G03110 71 / 4e-14 unknown protein Lus10026490 [exp] 45 / 9e-05 AT5G03110 61 / 6e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097700 [exp] 228 / 1e-63 AT3G15095 157 / 4e-40 high chlorophyll fluorescence 243, unknown protein Potri.001G373100 [exp] 213 / 7e-59 AT3G15095 155 / 2e-39 high chlorophyll fluorescence 243, unknown protein Potri.006G130500 [exp] 44 / 0.0003 AT5G03110 145 / 2e-41 unknown protein Potri.016G086900 [exp] 42 / 0.0008 AT5G03110 120 / 8e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013679 pacid=23169043 polypeptide=Lus10013679 locus=Lus10013679.g ID=Lus10013679.BGIv1.0 annot-version=v1.0 ATGGATACGGACAACAAACTAAGATCCCACCACCACCTTCGCCCCACCACCTCCTCTAATCATACTCCTACTACCACCACCACCACCTCCGCCACCACCA CTACTCCTACCAGTAGTAGTACGACGGCAGGAGGAGGAGAGCTCTTCATCTGCTTCAGCACTTCCCGCCTATCATCCTCCATGAAGATCTCCTCTTCTAA ATCCATCCTCAGTCCCGGCCGCCGCTCCTCCAGGGACCAGATTTCCCTCTCCGCCTCCCTCAGCCGCCGCCTCCGCACCAACGCCAGCCTCAAGGGCGGC CAGGCTTCCCCCATGTTCCCCTCAGGCGGCAAGAAGCGCGGCGGATCTTTCGAGAACCCTGAGCCTTCTTCCCCCAAGGTCACTTGCATCGGCCAGGTCC GGGTCAAGACCAAGAAGCAGAGCAAGAAGATGGTCACCAGATCTCTCTCCAGGAGAAGGTCCACTGGCGGGGAGGTTATGAGTTTCAAGAGATTGGAGCG CGGGATCTCTGATACTACTAACAACAACAGCAGCAATGGGGAATCGATGATTAGTGGCGGCGGTGGGAGTGGAGGGATTCAGTTCCAGCAGTACGAGTGT TTGCCGCCTGGGAGGAATCAGAGGTGGGTGCATCTTCCGGTTACGATTTGTGATGCGCTGAGAGCGTTTGGGTCCGAGTTCAACTGTTTTTTACCTTGTC GCTCCTCGTCTTGTATGGCCGGCGGTGATGACGGTAAGGAGAAGGAAGAGTCGAAGTCGGCTGCTACGGCGGTGGATGCTGGCGAATCCGGTAATAATGG CGGCGGGTCCTGTGGTGCCGTGTTTGCTCGGTGGCTGGTGGCTGTGCAAGAGAGAGATGTGAAAGGTAGGGAGATTGATTTGGTTGTTCGGAATGGTGAA GATAAACATGAAAATGACGGCGAGGAAGAAGAAGAAGAGTACAGTGACCTGGAAGTGAGACGGCGGAGCTACATAAGGCACCACGGATTTGAAGAAATAG ATTTGAATTTCAATCTGAAGGAAGAGGACGTGTTTGGAGGAAACAATGTTGAAGAAGAAGTAAAATCGAGGATGAGTATTTGCGTTCCACCGAAGAACGC TCTGTTACTGATGAGATGCAGATCTGACCCTGTCAAAGTGGCTGCTCTCGCTAACAAGTTCTGGAACCCTCCGGATACTGTCAATGCCATCGCAATCGGA GGAAGGATCAAGGCTGATGGTGAAGCTGAAGAAGGAGGAGCGGGTGGCCAGAGCTCAGAAGAAGAAAGCAAAGAAGCTGGAGGAGCAGGAGATGAAGAAG ATTGCGTTGCGGAAGTTTCTGAAATGGAAGTAACCGTGGACGCTGAGCGAACTGAGGCTAAATGCGAAGACGAAGAAGAAGCAATGGCGGCGGAAGAACT CAACCGAGTTCCAGAATCTGCGGCGGGGCTGGACGAAGTAGATGCTGTAGATGAGATTTCAGTGGTGGAGGAAGAGGATGATGGTAAAGAGGAAGAGATG GAGTCTCAAATGTTGATCGGCGATGAAGCAAATCCAGTCGATGGTTGTAGAAATGAAGAGCTCTCAGATCTGGAGAATCAGCCTGATGATGATGAAACGA TGATAGTAGCTCATCGGTGCATATCAACCGACGTCGGCGGGGAAGTACTGAAAACCAGTGAAGAAGAAGAAGAAGTGACGATAACGGTGGAGGATTCCGA CTCCCCAATGCCAGAACAAGAAGTAGATATGGAAGAAGAAGAACGACTGCCGGAGCAAGAACCAGAGAAGCCAGATGCAGCGGCGGAGGAGGAGGAAGAG AAGGAACCTAAGGGATCCAAATCCGAGGACCCGAAAGAAGCGGAGCAACCGGGCCCAACGGGTTGCAGGTCAAAAGAGAGAGAAAGTAAGCCGGGTTTAC CGGATTGCCTGCTGTTAATGATGTGCGAGCCCAAGGTGTCGATGGAGGTATCCAAGGAGACATGGGTTTGCAGTACGGATTTCGTCCGATGGTTACCAGA GCCGTCAAGGCAGGTCGCCGCCGTCAAGAAGTACAACGGCAAGAAGCTCCTCCCGAACAATAAAACCGAGAAAATCAGCAGCAACGTCGATGTCAACCCT GCGGCGGCGGCGCCAGTCCAGAAAGCTAAAATCGCGTTGCAGTTTCAGCCGCCGAGATCTTCTTGCTCGTATCCGGCTCAGCCGCCGGCGTGGCGTCCAG TGGCGGAGTCGATCGGGGAGGGGTTAGAGGAGCCGCGGCGGAGCCTAGGAAAGAATAACAAAGGGTACGAGCCGTTGATGCTGAAGAGGTGCAAGTCGGA GCCGAGGAAGACGGCGGCTAAGCTGGCTCCGGAGGCGTGTTGTTGGAAGAATAGGAAGCTGGAGCCGCAGCTTAGGATCGGCGCAGCCGGAGTTGGGTTC TAG
AA sequence Show only first row Show all	>Lus10013679 pacid=23169043 polypeptide=Lus10013679 locus=Lus10013679.g ID=Lus10013679.BGIv1.0 annot-version=v1.0 MDTDNKLRSHHHLRPTTSSNHTPTTTTTTSATTTTPTSSSTTAGGGELFICFSTSRLSSSMKISSSKSILSPGRRSSRDQISLSASLSRRLRTNASLKGG QASPMFPSGGKKRGGSFENPEPSSPKVTCIGQVRVKTKKQSKKMVTRSLSRRRSTGGEVMSFKRLERGISDTTNNNSSNGESMISGGGGSGGIQFQQYEC LPPGRNQRWVHLPVTICDALRAFGSEFNCFLPCRSSSCMAGGDDGKEKEESKSAATAVDAGESGNNGGGSCGAVFARWLVAVQERDVKGREIDLVVRNGE DKHENDGEEEEEEYSDLEVRRRSYIRHHGFEEIDLNFNLKEEDVFGGNNVEEEVKSRMSICVPPKNALLLMRCRSDPVKVAALANKFWNPPDTVNAIAIG GRIKADGEAEEGGAGGQSSEEESKEAGGAGDEEDCVAEVSEMEVTVDAERTEAKCEDEEEAMAAEELNRVPESAAGLDEVDAVDEISVVEEEDDGKEEEM ESQMLIGDEANPVDGCRNEELSDLENQPDDDETMIVAHRCISTDVGGEVLKTSEEEEEVTITVEDSDSPMPEQEVDMEEEERLPEQEPEKPDAAAEEEEE KEPKGSKSEDPKEAEQPGPTGCRSKERESKPGLPDCLLLMMCEPKVSMEVSKETWVCSTDFVRWLPEPSRQVAAVKKYNGKKLLPNNKTEKISSNVDVNP AAAAPVQKAKIALQFQPPRSSCSYPAQPPAWRPVAESIGEGLEEPRRSLGKNNKGYEPLMLKRCKSEPRKTAAKLAPEACCWKNRKLEPQLRIGAAGVGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15095		HCF243	high chlorophyll fluorescence ...		Lus10013679 [exp]	0	1
AT3G15095		HCF243	high chlorophyll fluorescence ...		Lus10017938 [exp]	1.0	0.9489
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10015996 [exp]	8.0	0.7157
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10023159 [exp]	10.9	0.7238
AT2G22140		ATEME1B	essential meiotic endonuclease...		Lus10006798 [exp]	10.9	0.6951
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Lus10000244 [exp]	11.2	0.7199
AT5G63650		SNRK2-5, SNRK2....	SNF1-RELATED PROTEIN KINASE 2H...		Lus10004291 [exp]	12.6	0.6276
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10020931 [exp]	15.3	0.6833
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10009146 [exp]	15.9	0.6662
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10028520 [exp]	21.9	0.6553
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10000486 [exp]	24.0	0.7002

Compare expression of checked genes

Lus10013679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.